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Weird chromosome bug in MT variant under GRCh38 #116

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iskandr opened this issue Aug 2, 2019 · 0 comments
Open

Weird chromosome bug in MT variant under GRCh38 #116

iskandr opened this issue Aug 2, 2019 · 0 comments

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@iskandr
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iskandr commented Aug 2, 2019 

isovar.allele_reads:272 - WARNING - Chromosome 'chr9' from variant Variant(contig='MT', start=12404, ref='T', alt='C', reference_name='GRCh38') not in alignment file b'/outputs/pgv001-002-grch38/rna_final_sorted.bam'
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