diff --git a/R/water_samples.R b/R/water_samples.R index 9ff7d60..50b2fb4 100644 --- a/R/water_samples.R +++ b/R/water_samples.R @@ -12,7 +12,7 @@ #' \item{T_avg}{Average ambient temperature at the time of the sampling} #' \item{pH}{Acidity/basicity of the sample using the pH value.} #' \item{TOC}{Total organic carbon (TOC) is an analytical parameter representing the concentration of organic carbon in a sample.} -#' \item{alkalinity}{Alkalinity of the sample as mg of bicarbonate (HCO3) per liter (mg[HCO3]/L).} +#' \item{alkalinity}{Alkalinity of the sample as mg of bicarbonate (HCO3) per liter (mg_HCO3/L).} #' \item{DO}{Dissolved oxygen (DO) levels in environmental water depend on the physiochemical and biochemical activities in water body and it is an important useful in pollution and waste treatment process control.} #' \item{ORP}{Oxidation reduction potential (ORP) in (mV).} #' \item{eH}{Redox potential (eH) in (mV).} diff --git a/README.Rmd b/README.Rmd index 0ce54da..17c0f18 100644 --- a/README.Rmd +++ b/README.Rmd @@ -175,3 +175,5 @@ citation("grdwtrsmpkwale") ``` ## Related References (TBD) + + diff --git a/README.md b/README.md index a8797d1..201a344 100644 --- a/README.md +++ b/README.md @@ -249,7 +249,7 @@ double Alkalinity of the sample as mg of bicarbonate (HCO3) per liter -(mg\[HCO3\]/L). +(mg_HCO3/L). as mg/L HCO3 @@ -2720,7 +2720,7 @@ Data are available as #> To cite package 'grdwtrsmpkwale' in publications use: #> - #> Zhong M, Loos S (2023). _grdwtrsmpkwale: Groundwater analysis from + #> Zhong M, Loos S (????). _grdwtrsmpkwale: Groundwater analysis from #> 2016 in Kwale, Kenya_. R package version 0.0.0.9000, #> . #> @@ -2729,7 +2729,6 @@ Data are available as #> @Manual{, #> title = {grdwtrsmpkwale: Groundwater analysis from 2016 in Kwale, Kenya}, #> author = {Mian Zhong and Sebastian Camilo Loos}, - #> year = {2023}, #> note = {R package version 0.0.0.9000}, #> url = {https://github.com/openwashdata/grdwtrsmpkwale}, #> } diff --git a/data-raw/data_processing.R b/data-raw/data_processing.R index 7a44d7f..5fd60ab 100644 --- a/data-raw/data_processing.R +++ b/data-raw/data_processing.R @@ -38,7 +38,7 @@ selected_samples_raw <- read_excel(here::here("data-raw", "samples.xlsx"), sheet = "Selected points sampled weekly", .name_repair = "unique") -# laod periodic system data +# load periodic system data data(periodicTable) periodic_data <- periodicTable |> select(c(numb:name)) @@ -61,7 +61,8 @@ samples_march_raw <- samples_march_raw |> utm_y = `UTM-Y`, date = Data, conductivity = Cond., - T_avg = Tª, + T_avg = `T`, + # T_avg = Tª, delta_O_18 = `d 18O`, delta_H_2 = d2H) |> rename_with(.cols = c(Localization, Geology, Alkalinity), @@ -95,7 +96,8 @@ samples_june_raw <- samples_june_raw |> utm_y = `UTM-Y`, date = Data, conductivity = Cond., - T_avg = Tª, + T_avg = `T`, + # T_avg = Tª, delta_O_18 = `d 18O`, delta_H_2 = d2H) |> rename_with(.cols = c(Localization, Geology, Alkalinity), diff --git a/data-raw/dictionary.csv b/data-raw/dictionary.csv index fd5e4f9..e3d372f 100644 --- a/data-raw/dictionary.csv +++ b/data-raw/dictionary.csv @@ -8,7 +8,7 @@ data/,water_samples.rda,conductivity,double,Conductivity of the sample in (µS/c data/,water_samples.rda,T_avg,double,Average ambient temperature at the time of the sampling,°C,NA data/,water_samples.rda,pH,double,Acidity/basicity of the sample using the pH value.,NA,NA data/,water_samples.rda,TOC,double,Total organic carbon (TOC) is an analytical parameter representing the concentration of organic carbon in a sample.,(mg/L),NA -data/,water_samples.rda,alkalinity,double,Alkalinity of the sample as mg of bicarbonate (HCO3) per liter (mg[HCO3]/L).,as mg/L HCO3,NA +data/,water_samples.rda,alkalinity,double,Alkalinity of the sample as mg of bicarbonate (HCO3) per liter (mg_HCO3/L).,as mg/L HCO3,NA data/,water_samples.rda,DO,double,Dissolved oxygen (DO) levels in environmental water depend on the physiochemical and biochemical activities in water body and it is an important useful in pollution and waste treatment process control.,(mg/L),NA data/,water_samples.rda,ORP,double,Oxidation reduction potential (ORP) in (mV).,mV,NA data/,water_samples.rda,eH,double,Redox potential (eH) in (mV).,mV,NA diff --git a/data-raw/dictionary.xlsx b/data-raw/dictionary.xlsx deleted file mode 100644 index 63a13d1..0000000 Binary files a/data-raw/dictionary.xlsx and /dev/null differ diff --git a/data-raw/samples.xlsx b/data-raw/samples.xlsx index 8730240..bfef232 100644 Binary files a/data-raw/samples.xlsx and b/data-raw/samples.xlsx differ diff --git a/inst/extdata/selected_samples.xlsx b/inst/extdata/selected_samples.xlsx index 39a2c81..05e231a 100644 Binary files a/inst/extdata/selected_samples.xlsx and b/inst/extdata/selected_samples.xlsx differ diff --git a/inst/extdata/water_samples.xlsx b/inst/extdata/water_samples.xlsx index daa5440..2c656c2 100644 Binary files a/inst/extdata/water_samples.xlsx and b/inst/extdata/water_samples.xlsx differ diff --git a/man/water_samples.Rd b/man/water_samples.Rd index 9328519..6f8e16c 100644 --- a/man/water_samples.Rd +++ b/man/water_samples.Rd @@ -17,7 +17,7 @@ A tibble with 157 rows and 80 variables \item{T_avg}{Average ambient temperature at the time of the sampling} \item{pH}{Acidity/basicity of the sample using the pH value.} \item{TOC}{Total organic carbon (TOC) is an analytical parameter representing the concentration of organic carbon in a sample.} -\item{alkalinity}{Alkalinity of the sample as mg of bicarbonate (HCO3) per liter (mg\link{HCO3}/L).} +\item{alkalinity}{Alkalinity of the sample as mg of bicarbonate (HCO3) per liter (mg_HCO3/L).} \item{DO}{Dissolved oxygen (DO) levels in environmental water depend on the physiochemical and biochemical activities in water body and it is an important useful in pollution and waste treatment process control.} \item{ORP}{Oxidation reduction potential (ORP) in (mV).} \item{eH}{Redox potential (eH) in (mV).}