ClandininLab

All

30 repositories

brukerbridge
Public
Python
•1•0•3•0•Updated Sep 27, 2024Sep 27, 2024
brainsss
Public
Preprocessing of volumetric neural data on sherlock (motion correction, zscoring, etc)
Jupyter Notebook
•4•5•2•2•Updated Sep 26, 2024Sep 26, 2024
multistim
Public
server/client and gui for presenting audio and visual stimuli to fruit flies
Python
•
MIT License
•0•0•0•0•Updated Sep 21, 2024Sep 21, 2024
stimpack
Public
Precise and flexible generation of stimuli for neuroscience experiments.
Python
•
GNU General Public License v3.0
•2•7•7•1•Updated Sep 20, 2024Sep 20, 2024
flyvr
Public
Python
•
Other
•0•0•0•0•Updated Aug 26, 2024Aug 26, 2024
visanalysis
Public
Analysis environment for visprotocol imaging experiments
Python
•
MIT License
•1•2•0•0•Updated Aug 25, 2024Aug 25, 2024
labpack
Public
Lab-specific stimuli, config, and resources to be used with stimpack
Python
•
GNU General Public License v3.0
•1•1•1•0•Updated Jul 17, 2024Jul 17, 2024
bifrost
Public
Template building and multi-modal registration
Python
•
MIT License
•1•4•2•0•Updated Jul 11, 2024Jul 11, 2024
visprotocol
Public
Visual stimulation protocol and metadata handler for flystim experiments
Python
•
MIT License
•0•0•3•0•Updated May 22, 2024May 22, 2024
L1L2-recurrent-feedback
Public
MATLAB
•0•0•0•0•Updated Mar 22, 2024Mar 22, 2024
modules
Public
Custom `lmod` modules for use on Sherlock
Lua
•0•0•0•0•Updated Jan 29, 2024Jan 29, 2024
flystim
Public
Visual stimulus generator for neuroscience experiments
virtual-reality scientific-computing visual-stimuli neuroscience-methods three-dimensional python
Python
•
MIT License
•2•4•6•0•Updated Jan 24, 2024Jan 24, 2024
voxelmorph
Public
Unsupervised Learning for Image Registration
Python
•
Apache License 2.0
•579•0•0•0•Updated Jun 21, 2023Jun 21, 2023
neurite
Public
Neural networks toolbox focused on medical image analysis
Python
•
Apache License 2.0
•67•0•0•0•Updated Jun 21, 2023Jun 21, 2023
pystrum
Public
A general library of python tools
Python
•12•0•0•0•Updated Jun 21, 2023Jun 21, 2023
brezovec_volition_2023
Public
Python
•0•0•0•0•Updated Jun 9, 2023Jun 9, 2023
flyrpc
Public
Library for managing server/client interactions
Python
•
Other
•0•0•0•0•Updated Jun 2, 2023Jun 2, 2023
pijm
Public
PIJM is just matplotlib
Python
•
MIT License
•0•0•0•0•Updated Sep 3, 2022Sep 3, 2022
brainsss2
Public
refactor of the brainsss repo for 2-photon imaging analysis
Jupyter Notebook
•
MIT License
•0•0•10•0•Updated Aug 9, 2022Aug 9, 2022
sleep-analysis
Public
Library for analyzing Drosophila Activity Monitor data
Jupyter Notebook
•
Other
•0•1•0•0•Updated Jul 11, 2022Jul 11, 2022
ANTsPy
Public
Advanced Normalization Tools in Python
Python
•
Apache License 2.0
•161•0•0•0•Updated Jun 29, 2022Jun 29, 2022
multisensory-freezing
Public
python scripts for the ball rig with auditory and visual stimuli
Python
•
MIT License
•0•0•0•0•Updated Dec 27, 2021Dec 27, 2021
lightcrafter
Public
Python
•
MIT License
•2•0•0•0•Updated Nov 23, 2021Nov 23, 2021
pasna-acr-currbio2021
Public
Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.
drosophila drosophila-melanogaster drosophila-larvae drosophila-brains
Python
•
Apache License 2.0
•0•1•0•0•Updated Sep 2, 2021Sep 2, 2021
fictrac
Public
A webcam-based method for tracking spherical motion and generating fictive animal paths.
C++
•
Other
•29•1•0•0•Updated Dec 15, 2020Dec 15, 2020
containers
Public
Commonly used containers and scripts to build them
Makefile
•0•0•0•0•Updated Oct 21, 2020Oct 21, 2020
goal-driven-ANNs
Public
Jupyter Notebook
•0•0•0•0•Updated Sep 25, 2020Sep 25, 2020
dataflow
Public
Jupyter Notebook
•1•0•0•0•Updated Mar 10, 2020Mar 10, 2020
ipp-tools
Public
Collection of IPyParallel tools and helper scripts
Python
•
MIT License
•1•0•0•0•Updated Jun 29, 2017Jun 29, 2017
2pstim
Public
Custom-written code for visual stimulus presentation (Clark et al. 2011)
C++
•0•0•0•0•Updated Feb 6, 2017Feb 6, 2017