Repositories list

• crobiad.github.io

  Public
  Crop Bioinformatics Adelaide (CroBiAd) group website

  SCSS

  •1•0•0•0•Updated Oct 19, 2022Oct 19, 2022

• potage

  Public
  POTAGE: Popseq Ordered Triticum Aestivum Gene Expression

  Java

  •

  Other

  •1•0•3•0•Updated Jul 2, 2021Jul 2, 2021

• jbrowse

  Public
  A modern genome browser built with JavaScript and HTML5.

  JavaScript

  •

  Other

  •198•0•0•0•Updated Dec 20, 2019Dec 20, 2019

• TILLinG-mutants

  Public
  Bioinformatics pipeline for the analysis of TILLinG mutants in conjunction with the new optimised reference sequence for tetraploid wheat

  Java

  •

  Other

  •0•0•0•0•Updated Oct 11, 2019Oct 11, 2019

• DuWTill

  Public
  Simple Web client for the database of mutations in the South Australian Durum Wheat Tilling (DuWTill) collection

  JavaScript

  •

  Other

  •1•0•0•0•Updated Jul 11, 2019Jul 11, 2019

• FeatureSequence

  Public
  JBrowse plugin to view the sequence of features

  JavaScript

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated Mar 14, 2019Mar 14, 2019

• gccontent

  Public
  A JBrowse plugin for plotting GC content and GC skew

  JavaScript

  •2•0•0•0•Updated Dec 26, 2018Dec 26, 2018

• multibigwig

  Public
  A JBrowse plugin for plotting multiple bigwig subtracks

  JavaScript

  •2•0•0•0•Updated Dec 19, 2018Dec 19, 2018

• DAWN

  Public
  Diversity Among Wheat geNomes (DAWN)

  1•0•10•0•Updated Jul 19, 2018Jul 19, 2018

• sambamba

  Public
  Tools for working with SAM/BAM/CRAM data

  D

  •

  GNU General Public License v2.0

  •106•0•0•0•Updated Jun 12, 2018Jun 12, 2018

• snakemake_intro

  Public
  Shell

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Jun 8, 2018Jun 8, 2018

• docker-potage

  Public
  Dockerfile for POTAGE

  Other

  •1•0•0•0•Updated Apr 9, 2018Apr 9, 2018

• easybuild-easyconfigs

  Public
  A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

  Python

  •

  GNU General Public License v2.0

  •723•0•0•0•Updated Jan 19, 2018Jan 19, 2018

• potage_data

  Public
  Public data sets repository for POTAGE

  Shell

  •1•0•0•0•Updated Sep 14, 2017Sep 14, 2017

• Ribbon

  Public
  Long read visualizer for genomics created using D3

  JavaScript

  •

  MIT License

  •30•0•0•0•Updated Jul 13, 2017Jul 13, 2017

• sequenceserver

  Public
  Intuitive local web frontend for the BLAST bioinformatics tool

  JavaScript

  •

  GNU Affero General Public License v3.0

  •113•0•0•0•Updated Oct 4, 2016Oct 4, 2016

• NGS-ADL-2017-11

  Public
  Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS

  TeX

  •9•0•0•0•Updated Jul 8, 2016Jul 8, 2016