Skip to content

@DeMarcoLab DeMarcoLab

Change the repository type filter

All

    Repositories list

    17 repositories

    • autolamella

      Public
      autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
      Python
      •
      MIT License
      •14•19•3•3•Updated Nov 13, 2024Nov 13, 2024

    • openfibsem-docs

      Public
      Documentation site for the OpenFIBSEM project
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • fibsem

      Public
      A universal API for FIBSEM control
      Python
      •
      MIT License
      •11•27•22•6•Updated Nov 12, 2024Nov 12, 2024

    • juno

      Public
      juno is a simulation package for optical system design using full wave propagation.
      Jupyter Notebook
      •
      MIT License
      •2•61•21•1•Updated Feb 22, 2024Feb 22, 2024

    • napari-openfibsem

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 1, 2024Feb 1, 2024

    • salami

      Public
      salami is a python package for volume electron microscopy
      Python
      •
      MIT License
      •1•3•5•0•Updated Oct 18, 2023Oct 18, 2023

    • openCLEM

      Public
      A universal API for Light Microscopy
      Jupyter Notebook
      •
      MIT License
      •0•1•20•0•Updated Oct 18, 2023Oct 18, 2023

    • bandpass-filter-gui

      Public
      A simple GUI to visualize bandpass filtering with different parameters.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2023Sep 10, 2023

    • imp_preprocessing_pipelines

      Public
      Pipelines to create neuroglancer formats from EM data, along with segmentations or object lists. Raw output can be used in neuroglancer, or used in IMP project to have an interactive app.
      cryo-emdata-conversionneuroglancer
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 20, 2023Jun 20, 2023

    • vulcan

      Public
      grayscale lithography
      Jupyter Notebook
      •
      MIT License
      •0•2•2•0•Updated Apr 18, 2023Apr 18, 2023

    • piescope

      Public
      Back end library for PIE-scope integrated cryo-correlative light and FIB/SEM microscopy
      Python
      •
      MIT License
      •0•3•0•13•Updated Feb 11, 2023Feb 11, 2023

    • IMP

      Public
      Integrated Microscopy and Proteomics
      TypeScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

    • imagereg

      Public
      GPU accelerated image registration
      Python
      •1•3•0•1•Updated Oct 3, 2022Oct 3, 2022

    • piescope_gui

      Public
      GUI for DeMarco lab FIB-SEM controls.
      Python
      •
      GNU General Public License v3.0
      •0•7•0•1•Updated Sep 27, 2022Sep 27, 2022

    • correlateim

      Public
      Correlate images using matched control points. Based on https://github.com/adal02/cpselect
      Python
      •
      MIT License
      •4•3•2•0•Updated Oct 14, 2020Oct 14, 2020

    • hachiko

      Public
      An extremely simple asyncio-compatible wrapper around Watchdog.
      Python
      •
      MIT License
      •13•1•0•0•Updated Mar 10, 2020Mar 10, 2020

    • 3DCT

      Public
      This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two dimensional SEM/FIB dual beam microscope images.
      Python
      •
      GNU General Public License v3.0
      •4•2•0•0•Updated Oct 28, 2019Oct 28, 2019