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    33 repositories

    • kpal

      Public
      Hardware control for imaging science
      Python
      •
      Other
      •0•1•0•0•Updated Oct 26, 2024Oct 26, 2024

    • Zeiss-microscope

      Public
      This is a wiki page for the labs Zeiss Axio Observer 7 microscope
      Python
      •0•2•2•0•Updated Oct 4, 2024Oct 4, 2024

    • deep-events

      Public
      Scripts and notebooks for annotation and handling of phase and fluorescent data for preparation and training of neural networks for event detection.
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • eda_plugin

      Public
      Plugin for event-driven acquisition to be used with Micro-Manager
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•0•Updated Jul 5, 2024Jul 5, 2024

    • iSIM

      Public
      iSIM control and analysis software
      Python
      •1•0•2•0•Updated Apr 26, 2024Apr 26, 2024

    • tracking-and-diffusion

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 8, 2024Mar 8, 2024

    • ptycho

      Public
      Hardware control and image analysis code for Fourier ptychography.
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Jan 22, 2024Jan 22, 2024

    • napari-eda-highlight-reel

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•3•0•Updated Nov 30, 2023Nov 30, 2023

    • led-array-datasets

      Public
      0•0•0•0•Updated Oct 2, 2023Oct 2, 2023

    • python-isim-control

      Public archive
      Python Control Interface for the iSIM at LEB-EPFL
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Aug 4, 2023Aug 4, 2023

    • imajin

      Public archive
      Tools to simulate optics and microscopy experiments.
      Python
      •0•0•0•0•Updated Aug 3, 2023Aug 3, 2023

    • MitoSplit-Net

      Public
      Detection of mitochondrial divisions with neural networks
      Jupyter Notebook
      •
      Other
      •0•2•3•0•Updated Jul 10, 2023Jul 10, 2023

    • project_layout

      Public template
      Python
      •0•2•0•0•Updated May 23, 2023May 23, 2023

    • rats

      Public
      High performance probabilistic state machine simulator
      Rust
      •
      MIT License
      •0•0•0•0•Updated Mar 16, 2023Mar 16, 2023

    • eda-napari

      Public
      event-driven-acquisition plugin for napari
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•2•0•Updated Feb 2, 2023Feb 2, 2023

    • pymm-eventserver

      Public
      Event Server to receive Micro-Manager events in python via zeromq
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 7, 2022Dec 7, 2022

    • EDA

      Public
      Tools for adaptive imaging in the LEB-EPFL
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Aug 19, 2022Aug 19, 2022

    • ImageInjector

      Public
      A simple plugin for injecting images into Micro-Manager's demo camera.
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 10, 2021Nov 10, 2021

    • WGmode

      Public
      2D simulation functions for slab and ridge waveguide mode study
      MATLAB
      •3•4•0•0•Updated Oct 30, 2018Oct 30, 2018

    • StormChaser

      Public
      DEMO 3D Double-Helix localization software
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 29, 2018Aug 29, 2018

    • ALICA

      Public
      Automated Laser Illumination Control Algorithms
      Java
      •
      GNU General Public License v3.0
      •3•5•2•0•Updated Jul 13, 2018Jul 13, 2018

    • mm-docker

      Public
      Dockerfiles for building Micro-Manager components.
      Shell
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Jun 13, 2018Jun 13, 2018

    • ALICA_ACPack

      Public
      Analyzer and controller implementations for ALICA.
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 6, 2018Jun 6, 2018

    • SASS

      Public
      Toolkit for simulating real-time control systems for super-resolution microscopy.
      stormimagejsimulationmicroscopysuper-resolutionpalm
      Java
      •
      GNU General Public License v3.0
      •4•7•7•0•Updated Jun 5, 2018Jun 5, 2018

    • DEFCoN-ImageJ

      Public
      An ImageJ plugin for DEFCoN, the fluorescence spot counter based on fully convolutional neural networks.
      fluorescencemicroscopyimagejfiji
      Java
      •
      GNU General Public License v3.0
      •0•2•2•0•Updated Jun 5, 2018Jun 5, 2018

    • ALICA_interfaces

      Public
      Interfaces to the primary components of ALICA.
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 1, 2018May 1, 2018

    • sDaDa

      Public
      Shape Dynamics Automated Data Analysis
      MATLAB
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Apr 26, 2018Apr 26, 2018

    • DEFCoN

      Public
      Single molecule density estimation by fully convolutional neural networks
      Python
      •
      Other
      •1•11•0•0•Updated Apr 9, 2018Apr 9, 2018

    • MitoWorks

      Public
      Collection of MATLAB functions for analysis of mitochondrial shape and dynamics.
      MATLAB
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Mar 5, 2018Mar 5, 2018

    • fifi_parts_list

      Public
      The parts list for FIFI, the flat-field illuminator for large field of view localization microscopy.
      MIT License
      •0•1•0•0•Updated Jan 19, 2017Jan 19, 2017