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    12 repositories

    • marralab

      Public
      Source code for Marra Lab website
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • GRETTA

      Public
      GRETTA (Genetic inteRaction and EssenTiality neTwork mApper): An R package for mapping genetic interaction and essentiality networks
      R
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • GRETTA-dev

      Public
      In-house dev version of GRETTA (Genetic inteRaction and EssenTiality neTwork mApper): An R package for mapping genetic interaction and essentiality networks
      R
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • .github

      Public
      0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

    • KMT2D_genetic_network_study

      Public
      Supporting material for upcoming manuscript on KMT2D in silico genetic networks
      publicationsgenetic-interactions
      R
      •
      MIT License
      •1•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • Porter-ONT-HPV-FigureScripts2023

      Public
      The figure scripts pertaining to the manuscript titled "Genomic structures and regulation patterns at regions of HPV integration in cervical cancer"
      HTML
      •1•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • VPorter_HPV_integration

      Public
      A collection of workflows for calling HPV integration with long and short-read sequencing
      0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • callHPVIntegrationShortReadWGS

      Public
      Workflow for calling HPV integration sites and events in Illumina short-read sequencing data.
      Python
      •1•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • callHPVIntegrationLongReadWGS

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • callRNAHPVFusions

      Public
      Calling HPV integration RNA fusions between the human and viral genomes.
      Python
      •1•0•0•0•Updated Oct 8, 2024Oct 8, 2024

    • Longitudinal_pAML_paper

      Public
      publicationsaml
      R
      •2•0•0•0•Updated Oct 13, 2023Oct 13, 2023

    • GBM-PDE-paper

      Public
      publicationsgbm
      R
      •3•0•0•0•Updated Mar 26, 2022Mar 26, 2022