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    2k repositories

    • osb-model-validation

      Public
      Tools for automated model validation in OpenSourceBrain projects
      XSLT
      •
      GNU Lesser General Public License v3.0
      •10•9•15•0•Updated Feb 12, 2025Feb 12, 2025

    • PyNNShowcase

      Public
      A repository for testing interactions/conversions between NeuroML & PyNN
      Python
      •1•4•0•0•Updated Feb 10, 2025Feb 10, 2025

    • EDENShowcase

      Public
      Repository for testing EDEN simulator with NeuroML, OSB, notebooks, etc.
      Python
      •
      MIT License
      •0•3•0•1•Updated Feb 6, 2025Feb 6, 2025

    • OSBv2

      Public
      An updated version of the Open Source Brain platform
      jupyter-notebookneurosciencecomputational-neurosciencejupyterlabnwbneuromldandi-archivenwbexplorernetpyne
      Python
      •
      Other
      •6•12•119•11•Updated Feb 6, 2025Feb 6, 2025

    • NeuroMLSBMLShowcase

      Public
      Models combining elements specified in NeuroML and SBML
      combinesbmlneuromlopensourcebrain
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • SBMLShowcase

      Public
      OSB showcase of interactions between SBML and NeuroML
      Python
      •2•1•6•1•Updated Feb 3, 2025Feb 3, 2025

    • PotjansDiesmann2014

      Public
      Large scale model of cortical network from Potjans and Diesmann, 2014
      Python
      •
      GNU General Public License v3.0
      •7•5•3•2•Updated Jan 14, 2025Jan 14, 2025

    • NESTShowcase

      Public
      Mapping NeuroML2/LEMS to NEST
      Python
      •1•1•0•1•Updated Jan 14, 2025Jan 14, 2025

    • Brunel2000

      Public
      Sparsely connected spiking neuron network from Brunel 2000
      Python
      •
      Other
      •2•4•1•1•Updated Jan 14, 2025Jan 14, 2025

    • XPPShowcase

      Public
      Showcase of XPP(AUT) models interacting with NeuroML2/LEMS
      0•0•0•1•Updated Jan 14, 2025Jan 14, 2025

    • NetPyNEShowcase

      Public
      NetPyNE & NeuroML interactions
      Python
      •2•3•2•1•Updated Dec 20, 2024Dec 20, 2024

    • ArborShowcase

      Public
      Examples of Arbor<->NeuroML
      Jupyter Notebook
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • OpenCortex

      Public
      A framework for building cortical network models on OSB
      Python
      •5•11•0•1•Updated Dec 19, 2024Dec 19, 2024

    • CelegansNeuromechanicalGaitModulation

      Public
      C. elegans neuromechanical gait modulation model from Boyle, Berri and Cohen 2012
      C
      •7•5•0•1•Updated Dec 19, 2024Dec 19, 2024

    • 2018021

      Public
      Disinhibitory circuit for arousal effects in perceptual decision making tasks (Beerendonk et al., 2024)
      MATLAB
      •1•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • DANDIArchiveShowcase

      Public
      Scripts for interacting with the DANDI Archive
      Python
      •5•3•1•1•Updated Nov 28, 2024Nov 28, 2024

    • HindmarshRose1984

      Public
      HindmarshRose 1984 cell model
      Python
      •1•0•1•1•Updated Nov 12, 2024Nov 12, 2024

    • pynsgr

      Public
      Python interface to the NeuroScience Gateway REST interface, based on pycipres
      Python
      •
      MIT License
      •3•2•4•0•Updated Oct 24, 2024Oct 24, 2024

    • L5bPyrCellHayEtAl2011

      Public
      Layer 5b Pyramidal cell - Hay et al. 2011
      AGS Script
      •
      Other
      •2•6•3•0•Updated Oct 23, 2024Oct 23, 2024

    • 2016218

      Public
      A model of rodent mechanoreceptors (LTMRs) (Medlock et al., 2024)
      MATLAB
      •1•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • 2018009

      Public
      Synchronization in a realistic model of CA1 pyramidal neurons (Fiasconaro and Migliore 2024)
      AGS Script
      •1•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • NEURONShowcase

      Public
      Examples of how to convert NEURON to & from NeuroML
      AMPL
      •2•1•2•0•Updated Sep 24, 2024Sep 24, 2024

    • BrianShowcase

      Public
      A testbed for interactions between Brian and NeuroML2/LEMS
      Python
      •0•1•0•1•Updated Sep 2, 2024Sep 2, 2024

    • OSB_homepage

      Public
      OSB homepage
      HTML
      •
      Apache License 2.0
      •0•0•3•0•Updated Aug 29, 2024Aug 29, 2024

    • 243446

      Public
      Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells (Zang et al 2018)
      NMODL
      •2•0•0•1•Updated Aug 21, 2024Aug 21, 2024

    • 262670

      Public
      Locust olfactory network with GGN and full KC population in the mushroom body (Ray et al 2020)
      Python
      •4•0•1•0•Updated Aug 20, 2024Aug 20, 2024

    • AllenInstituteNeuroML

      Public
      Example files to test interaction between models developed at the Allen Brain Institute and NeuroML
      HTML
      •
      Other
      •10•17•5•1•Updated Aug 19, 2024Aug 19, 2024

    • 2016658

      Public
      Persistent Interruption in Parvalbumin-Positive Inhibitory Interneurons: Biophysical and Mathematical Mechanisms (Upchurch et al., 2024)
      Python
      •1•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • Thalamocortical

      Public
      GitHub repository for an OSB project containing a thalamocortical network model based on Traub et al. 2005
      XSLT
      •
      Other
      •12•9•3•0•Updated Jul 31, 2024Jul 31, 2024

    • 267741

      Public
      Biochemically detailed model of post-synaptic plasticity for computational analyses of schizophrenia (Maki-Marttunen et al. in press)
      Python
      •2•0•0•0•Updated Jul 31, 2024Jul 31, 2024