Repositories list

• Stauffer_et_al_2024

  Public
  HTML

  •0•0•0•0•Updated Jul 23, 2024Jul 23, 2024

• Groves-CellSys2022

  Public
  Code and figures related to Groves et al. submitted to Cell Systems 2021

  Jupyter Notebook

  •2•0•0•0•Updated Oct 4, 2023Oct 4, 2023

• tempo_code

  Public
  Repository for code developed for various projects on the Tempo server.

  Jupyter Notebook

  •1•0•0•0•Updated Sep 27, 2023Sep 27, 2023

• AAnet_torch

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Apr 10, 2023Apr 10, 2023

• DIP_rate_NatMeth2016

  Public
  R

  •3•1•0•0•Updated Mar 13, 2023Mar 13, 2023

• EMT_SCLC_project

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Mar 9, 2023Mar 9, 2023

• TIPS_Review_2020

  Public
  Repository for code related to Meyer et al. Trends in Pharmacological Sciences Review

  MATLAB

  •0•0•0•20•Updated Feb 15, 2023Feb 15, 2023

• musyc-web

  Public
  Musyc web app

  Python

  •

  GNU Affero General Public License v3.0

  •1•0•0•5•Updated Feb 10, 2023Feb 10, 2023

• MuSyC_Cell

  Public
  Python

  •3•8•1•15•Updated Dec 8, 2022Dec 8, 2022

• SAMap

  Public
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

  Jupyter Notebook

  •

  MIT License

  •19•0•0•0•Updated Oct 5, 2022Oct 5, 2022

• mazebox

  Public
  A collection of bioinformatics tools for analyzing single-cell transcriptomics data.

  Python

  •

  MIT License

  •1•0•0•0•Updated Oct 2, 2022Oct 2, 2022

• COATI

  Public
  Calcium oscillation analysis tool

  Python

  •0•0•0•0•Updated Aug 10, 2022Aug 10, 2022

• AAnet

  Public
  Archetypal Analysis network (AAnet)

  Jupyter Notebook

  •9•0•0•0•Updated Aug 2, 2022Aug 2, 2022

• GES_2021

  Public
  Code (data analysis and model simulations) for GES paper (2020).

  R

  •0•0•0•0•Updated May 31, 2022May 31, 2022

• RT-Glow

  Public
  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 3, 2022Feb 3, 2022

• NotchDynamics_SCLC

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 30, 2021Nov 30, 2021

• BooleanModel_SOCE

  Public
  This repository contains the pipelines to simulate the boolean network for SOCE/BRAFi network.

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Oct 22, 2021Oct 22, 2021

• YAP-TAZ-Model

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 18, 2021Jul 18, 2021

• Notch_model_SCLC

  Public
  Python

  •0•0•0•0•Updated May 25, 2021May 25, 2021

• sequencing_pipelines

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Feb 8, 2021Feb 8, 2021

• dipDRC

  Public
  Code for analyzing dose-response curves using DIP rate as the effect metric

  R

  •

  GNU Affero General Public License v3.0

  •1•1•0•0•Updated Dec 10, 2020Dec 10, 2020

• SCLC-Cancer-Cell-Manuscript

  Public
  Python

  •6•0•0•0•Updated Nov 30, 2020Nov 30, 2020

• FootprintMethods_on_scRNAseq

  Public
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

  R

  •

  GNU General Public License v3.0

  •8•0•0•0•Updated Mar 2, 2020Mar 2, 2020

• practice_repo

  Public
  Just a repo to play with for learning how to use git

  R

  •0•0•0•0•Updated Sep 10, 2019Sep 10, 2019

• QuLab-VU.github.io

  Public
  Public GitHub Pages site for The Quaranta Lab at Vanderbilt University

  HTML

  •

  MIT License

  •1•0•0•0•Updated Mar 7, 2018Mar 7, 2018

• Segmentation-Matlab

  Public
  MATLAB

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 30, 2016Nov 30, 2016

• Manuscript-code

  Public
  Code used in publications

  0•0•0•0•Updated Sep 21, 2015Sep 21, 2015