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    33 repositories

    • biofilter

      Public
      aimlalzheimeralzheimersniaadspag066833u01ag066833
      Python
      •0•0•6•0•Updated Aug 1, 2025Aug 1, 2025

    • athena-python

      Public
      Python implementation of ATHENA developed by the Ritchie Lab
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • glp1-phewas

      Public
      R scripts used to pull, curate, and analyze All of Us data for a GLP-1 RA PheWAS
      R
      •0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

    • visualization

      Public
      Ruby
      •
      MIT License
      •0•0•0•0•Updated Apr 14, 2025Apr 14, 2025

    • BMI_PGS_eLife

      Public
      Code and data for Hui et al. eLife (2024)
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • LOKI

      Public
      Python
      •0•0•7•1•Updated Oct 9, 2024Oct 9, 2024

    • HFmultiomics_PSB2025

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • anatomogram_script

      Public
      Python
      •0•0•0•0•Updated May 31, 2024May 31, 2024

    • biobin

      Public
      C++
      •0•2•0•0•Updated Sep 20, 2023Sep 20, 2023

    • PrediXcan_TWAS_nextflow

      Public
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Aug 17, 2023Aug 17, 2023

    • GWAS-QC

      Public
      Quality control steps for GWAS
      Shell
      •8•24•1•0•Updated Aug 11, 2023Aug 11, 2023

    • LocoColoc

      Public
      Consolidation of ColocQuiaL, eQTLPlot and Sudha's Gene Based Coloc tools
      R
      •2•1•0•0•Updated May 17, 2023May 17, 2023

    • GWAS-QC-Internal

      Public
      Quality control steps for GWAS -- Internal Use
      Shell
      •8•1•0•0•Updated Mar 27, 2023Mar 27, 2023

    • genomeSIMLA

      Public
      C++
      •0•1•0•0•Updated Feb 16, 2023Feb 16, 2023

    • eQTpLot

      Public
      Visualization of Colocalization Between eQTL and GWAS Data
      R
      •20•84•1•0•Updated May 13, 2022May 13, 2022

    • utility

      Public
      Python
      •0•0•1•0•Updated Nov 22, 2021Nov 22, 2021

    • hudson

      Public
      An R package for creating mirrored Manhattan plots
      R
      •12•4•0•0•Updated Nov 10, 2021Nov 10, 2021

    • LPC

      Public
      Documentation and informational resources for LPC use
      MIT License
      •9•1•0•0•Updated Oct 13, 2021Oct 13, 2021

    • Gene-level-statistical-colocalization

      Public
      R
      •2•15•2•0•Updated Apr 20, 2021Apr 20, 2021

    • imputation

      Public
      Python
      •0•0•0•0•Updated Mar 17, 2021Mar 17, 2021

    • dnanexus

      Public
      C++
      •
      GNU General Public License v3.0
      •6•1•0•0•Updated Mar 11, 2021Mar 11, 2021

    • PLATO

      Public
      PLatform for the Analysis, Translation, and Organization of large-scale data
      C++
      •0•0•1•0•Updated Dec 8, 2020Dec 8, 2020

    • COVID-19-patient-survey

      Public
      Patient reported surveys to deploy in observational studies during COVID-19 pandemic
      0•1•0•0•Updated Jun 29, 2020Jun 29, 2020

    • multi_tissue_twas_sim

      Public
      This repository provides scripts to simulate SNP-expression-trait relationships across multiple tissues.
      R
      •0•1•0•0•Updated Apr 15, 2020Apr 15, 2020

    • athena

      Public
      aimlalzheimeralzheimersniaadspag066833u01ag066833
      C++
      •0•2•0•0•Updated Feb 12, 2020Feb 12, 2020

    • pMDR

      Public
      Parallel MDR (Multifactor dimensionality reduction)
      C++
      •0•1•1•0•Updated Jan 9, 2020Jan 9, 2020

    • paris

      Public
      C++
      •0•0•0•0•Updated Apr 23, 2018Apr 23, 2018

    • eMERGE-PGX

      Public
      Shell
      •0•0•0•0•Updated Apr 18, 2018Apr 18, 2018

    • ldspline

      Public
      C++
      •0•0•0•0•Updated Apr 18, 2018Apr 18, 2018

    • metabochip-phewas

      Public
      Python
      •0•0•0•0•Updated Apr 18, 2018Apr 18, 2018