Repositories list

• chinotype

  Public
  General purpose script for looking for over and under represented EHR facts in an i2b2 patient-set. Can be used for finding healthcare outcomes disparities, comorbidities, and who knows what else. The name is a portmanteau of Chi-squared and phenotype.

  ehri2b2disparities

  Python

  •0•2•3•2•Updated Jan 20, 2023Jan 20, 2023

• datafinisher

  Public
  i2b2i2b2-plugins

  Python

  •0•0•1•0•Updated Jul 23, 2020Jul 23, 2020

• paper01_rai

  Public
  The data analysis portion of the RAI code.

  R

  •

  MIT License

  •1•0•0•0•Updated Mar 27, 2019Mar 27, 2019

• deb_dw_rebrand

  Public
  CSS

  •0•0•0•0•Updated Nov 10, 2018Nov 10, 2018

• GPC-Weight-Health-Survey

  Public
  CSS

  •

  GNU General Public License v3.0

  •0•0•15•0•Updated Sep 5, 2018Sep 5, 2018

• CDMPullDataSets

  Public
  Pull the CDM data sets instead of creating views

  SAS

  •0•0•0•0•Updated Aug 7, 2018Aug 7, 2018

• addressfix

  Public
  Wrapper for a couple of address parsing/standardizing libraries for the purpose of cleaning up addresses in CSV files.

  wrappercsv-filesaddress-parsing

  Python

  •

  MIT License

  •0•1•0•0•Updated May 30, 2018May 30, 2018

• paper_kidneycancer

  Public
  R

  •

  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated May 16, 2018May 16, 2018

• i2b2

  Public
  Local i2b2 user community

  0•0•0•0•Updated May 5, 2018May 5, 2018

• grant_01_kidneycancer

  Public
  Preliminary data for Ron Rodriguez et al. R21 disparities grant for Kidney Cancer

  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 10, 2018Feb 10, 2018

• 2017-fall-TSCI-5050

  Public
  TSCI 5050, Introduction to Data Science, Fall 2017

  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 12, 2017Dec 12, 2017

• HCUP-ETL

  Public
  MIT License

  •0•0•1•0•Updated Oct 20, 2017Oct 20, 2017

• HIV-Simulation

  Public
  HIV Transmission ABM

  Java

  •0•2•0•0•Updated Oct 20, 2017Oct 20, 2017

• paper_falls_in_elderly

  Public
  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated May 12, 2017May 12, 2017

• 2017-Spring-TSCI-5050

  Public
  R

  •0•0•0•0•Updated May 9, 2017May 9, 2017

• Cird_util_cohort_fact

  Public
  Utility function for adding a cohort fact from an I2B2 Query.

  PLSQL

  •0•0•0•0•Updated May 3, 2017May 3, 2017

• GPC-height-weight-manuscript

  Public
  healthsurvey-dataweight+ 2patientsgpc

  0•1•0•0•Updated Apr 12, 2017Apr 12, 2017

• i2p-transform

  Public
  i2b2 to PCORnet Common Data Model Transformation - requires i2b2 PCORnet ontology

  PLSQL

  •

  Other

  •16•0•0•0•Updated Dec 10, 2016Dec 10, 2016

• allostatic_loadtest

  Public
  R

  •

  GNU Lesser General Public License v2.1

  •1•0•1•0•Updated Dec 8, 2016Dec 8, 2016

• 2016-Fall-TSCI-5050

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Dec 7, 2016Dec 7, 2016

• datafinisher_backup

  Public
  Python

  •3•0•2•0•Updated Oct 4, 2016Oct 4, 2016

• TABSIE

  Public
  Table Ananlyzer, Browser, and Summarizer for Informatics Exploration

  CSS

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 29, 2016Sep 29, 2016

• TDG

  Public
  Tabsie Data Generator

  R

  •0•0•0•0•Updated Sep 7, 2016Sep 7, 2016

• i2b2_configs

  Public
  (local) tools and templates for deploying i2b2 and SHRINE

  XSLT

  •0•0•0•0•Updated Jul 13, 2016Jul 13, 2016

• TSCI-5050

  Public
  Course: TSCI 5050, Introduction to Data Science

  R

  •

  Creative Commons Zero v1.0 Universal

  •8•0•1•0•Updated May 16, 2016May 16, 2016

• rando

  Public
  Random variable generation by creating random functions in R

  R

  •

  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated May 4, 2016May 4, 2016

• PullMatches

  Public
  Java app matching algorithms

  Java

  •0•0•0•0•Updated Apr 14, 2016Apr 14, 2016

• Rcasematch

  Public
  R package of functions useful for finding a control group for a cohort of interest, particularly when analyzing retrospective EHR data

  R

  •

  GNU Lesser General Public License v2.1

  •1•0•0•0•Updated Apr 12, 2016Apr 12, 2016

• databuilder_automate

  Public
  Scripts to automate data builder / data finisher

  Python

  •0•1•0•0•Updated Dec 21, 2015Dec 21, 2015

• PrelimA

  Public
  R

  •0•0•0•0•Updated Dec 17, 2015Dec 17, 2015