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@VEuPathDB VEuPathDB Bioinformatics Resource Center

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    335 repositories

    • OrthoMCLWebsite

      Public
      Apache License 2.0
      •0•0•0•1•Updated Nov 15, 2024Nov 15, 2024

    • MicrobiomeWebsite

      Public
      R
      •
      Apache License 2.0
      •0•2•2•1•Updated Nov 15, 2024Nov 15, 2024

    • ClinEpiWebsite

      Public
      CSS
      •
      Apache License 2.0
      •0•2•3•1•Updated Nov 15, 2024Nov 15, 2024

    • ApiCommonWebsite

      Public
      Perl
      •
      Apache License 2.0
      •1•3•0•1•Updated Nov 15, 2024Nov 15, 2024

    • ms-peptides-nextflow

      Public
      Trolls older mass spec experiments and maps the peptides onto the current proteome.
      Apache License 2.0
      •0•0•0•1•Updated Nov 15, 2024Nov 15, 2024

    • ApiCommonWorkflow

      Public
      Perl
      •
      Apache License 2.0
      •1•0•0•5•Updated Nov 15, 2024Nov 15, 2024

    • web-monorepo

      Public
      A monorepo that contains all frontend code for VEuPathDB websites
      TypeScript
      •
      Apache License 2.0
      •0•2•178•21•Updated Nov 15, 2024Nov 15, 2024

    • conifer

      Public
      Configuration management tool for VEuPathDB GUS-based websites
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Nov 15, 2024Nov 15, 2024

    • vdi-service

      Public
      vdi
      Kotlin
      •
      Apache License 2.0
      •0•0•39•0•Updated Nov 15, 2024Nov 15, 2024

    • StaticContent

      Public
      HTML
      •
      Apache License 2.0
      •6•0•0•4•Updated Nov 15, 2024Nov 15, 2024

    • OrthoMCLModel

      Public
      Java
      •
      Apache License 2.0
      •0•0•0•1•Updated Nov 15, 2024Nov 15, 2024

    • EbrcModelCommon

      Public
      Java
      •
      Apache License 2.0
      •2•1•4•2•Updated Nov 15, 2024Nov 15, 2024

    • ApiCommonData

      Public
      Perl
      •
      Apache License 2.0
      •3•3•0•4•Updated Nov 15, 2024Nov 15, 2024

    • EbrcWebsiteCommon

      Public
      Perl
      •
      Apache License 2.0
      •3•3•8•3•Updated Nov 15, 2024Nov 15, 2024

    • ApidbSchema

      Public
      SQL and scripts to install the ApiDB schema
      PLSQL
      •
      Apache License 2.0
      •0•0•0•4•Updated Nov 15, 2024Nov 15, 2024

    • ebi2gus

      Public
      Code related to representing data from E! Core workflow in GUS schema
      Perl
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • mitoprot-nextflow

      Public
      Nextflow Conversion of mitoprot tool
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • marker-gene-analysis-16s-DADA2-nextflow

      Public
      Nextflow Conversion of ASVTableTask.pm
      R
      •
      MIT License
      •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • gpi-anchor-prediction-nextflow

      Public
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • bowtie-mapping-nextflow

      Public
      Nextflow conversion of BowtieMappingTask
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • blast-similarity-nextflow

      Public
      Nextflow workflow for blastSimilarity
      Perl
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • websiteconf

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • psipred-nextflow

      Public
      Nextflow Workflow for moving away from DJOB
      Nextflow
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • protein-to-genome-alignment-nextflow

      Public
      nextflow workflow to align protein sequence to genomic sequence
      Nextflow
      •
      Apache License 2.0
      •1•0•2•0•Updated Nov 14, 2024Nov 14, 2024

    • iterativeWGCNA

      Public
      Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
      Python
      •
      GNU General Public License v2.0
      •17•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • iprscan5-nextflow

      Public
      Nextflow Conversion of Iprscan5Task
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • diamond-similarity-nextflow

      Public
      Nextflow workflow substituting diamond for blast
      Perl
      •
      MIT License
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • blat-nextflow

      Public
      Nextflow Conversion of GenomeAlignWithGfClientTask
      Nextflow
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • install

      Public
      Shell
      •
      Apache License 2.0
      •2•0•1•21•Updated Nov 14, 2024Nov 14, 2024

    • WSF

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•1•Updated Nov 14, 2024Nov 14, 2024