Repositories list

• beacon2-app-virus

  Public
  Implementation of a Beacon v2 customized for SARS-COV-2

  JavaScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• biomedical-integrator-impactData

  Public
  Source code of the Biomedical Data integration demo developed in IMPaCT-Data

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• CSVS

  Public
  Population Variant Server

  JavaScript

  •

  GNU General Public License v2.0

  •3•5•1•4•Updated Nov 27, 2024Nov 27, 2024

• stevia-elements

  Public
  HTML

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jul 4, 2024Jul 4, 2024

• SFtool

  Public
  Secondary Findings tool

  Python

  •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• hipathia_web

  Public
  Web interface to HiPathia

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•5•Updated May 28, 2024May 28, 2024

• SpPGS

  Public
  Nextflow

  •

  MIT License

  •1•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• TCGA_SARC

  Public
  R

  •0•0•0•0•Updated Jan 24, 2024Jan 24, 2024

• ivae_scorer

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Dec 30, 2023Dec 30, 2023

• drexml-retinitis

  Public
  R

  •

  MIT License

  •1•0•0•0•Updated Dec 27, 2023Dec 27, 2023

• sigprimednet

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Sep 23, 2023Sep 23, 2023

• signalization_prior_knowledge_based_nn

  Public
  Jupyter Notebook

  •2•2•0•0•Updated Sep 23, 2023Sep 23, 2023

• metabolizer

  Public
  Web tool to analyze transcriptomic (and mutational) data in the context of metabolic pathways

  HTML

  •0•2•1•0•Updated Jun 12, 2023Jun 12, 2023

• SPACNACS

  Public
  JavaScript

  •0•0•0•0•Updated May 24, 2023May 24, 2023

• SMAca

  Public
  SMN1 copy-number and sequence variant analysis from next generation sequencing data

  Python

  •

  GNU General Public License v3.0

  •6•22•1•0•Updated May 9, 2023May 9, 2023

• ngscat2

  Public
  Improved version of Next Generation Sequencing data Capture Assessment Tool (ngsCAT)

  Python

  •3•0•1•3•Updated Dec 8, 2022Dec 8, 2022

• impuSARS

  Public
  Software tool for the imputation of whole-genome SARS-CoV-2 sequences.

  Shell

  •

  MIT License

  •0•4•2•0•Updated Nov 28, 2022Nov 28, 2022

• MIGNON

  Public
  Mechanistic integrative analysis of RNA-Seq data

  WDL

  •

  MIT License

  •6•7•1•0•Updated Nov 6, 2022Nov 6, 2022

• sptest

  Public
  HiveQL

  •1•0•0•0•Updated Oct 7, 2022Oct 7, 2022

• hipathia

  Public
  Signaling pathway model

  R

  •3•7•0•0•Updated Jul 27, 2022Jul 27, 2022

• metagenomic-crc

  Public
  HTML

  •

  MIT License

  •3•4•0•0•Updated Apr 20, 2022Apr 20, 2022

• mmp-cancer

  Public
  Backend services for MMP-Cancer

  Java

  •0•0•0•0•Updated Mar 21, 2022Mar 21, 2022

• mmp-cancer-client

  Public
  Frontend for MMP-Cancer

  TypeScript

  •

  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated Mar 17, 2022Mar 17, 2022

• MechACov

  Public
  reactjsmetanalysismetaanalysis+ 2covid19-databiohackeu20

  TypeScript

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Feb 15, 2021Feb 15, 2021

• pathway-viewer

  Public
  Code for pathway visualization and management

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 27, 2021Jan 27, 2021

• network-viewer

  Public
  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 26, 2021Jan 26, 2021

• Metabolica

  Public
  R

  •0•0•0•0•Updated Sep 17, 2020Sep 17, 2020

• iva

  Public
  Interactive Variant Analysis tool, forked from OpenCB https://github.com/opencb/iva, documentation at http://docs.opencb.org/display/iva

  HTML

  •

  Apache License 2.0

  •18•1•0•0•Updated Mar 12, 2020Mar 12, 2020

• jsorolla

  Public
  JSorolla is a JavaScript Library for biological and genomic data visualization

  HTML

  •

  Apache License 2.0

  •29•0•0•0•Updated Mar 12, 2020Mar 12, 2020

• OpenEBench_CIBERER

  Public
  0•0•0•0•Updated Mar 3, 2020Mar 3, 2020