Change the repository type filter
All
Repositories list
332 repositories
docs
PublicBrainlife.io Documentationezbids
PublicA web service for semi-automated conversion of raw imaging data to BIDSui-niivue
Publicamaretti
Publicapp-stage
Public- Library to access brainlife.io data objects and jupyter notebooks
auth
Publicapp-synthstrip
Publicapp-mriqc
Publicvalidator-neuro-mask
Publicapp-fmriprep
PublicfMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.abcd-spec
PublicApplication for Big Computational Data Specification (v1.1). This specification provide information on how to write an Application that can run on the open platformapp-benson14-retinotopy
Publicapp-detect-alpha-peak
Publicapp-average-tractmasks
Public- Create plots of diffusion metrics (i.e. FA, MD, RD, AD) for each of the segmented tracts from AFQ, known as Tract Profiles. Obtains streamline positions from segmented tracts and plots the metrics of interest along "nodes" of the tract, allowing for comparison of individual subject tracts. Requires the dt6 output from dtiinit and a white matter …
app-clean-parcellation
Public- This app will map volumated measure files (i.e. tensor, NODDI) to the cortical surface following Fukutomi et al (2018; 10.1016/j.neuroimage.2018.02.017) using Connectome Workbench.
bl-app-audit
Publicdockerfiles
Publicapp-tractDensityMasks
Publicapp-dwinormalise
Publicapp-mrtrix3-preproc
PublicRun the recommended preprocessing procedure provided by mrtrix3. The options available mostly reflect the optimal DESIGNER pipeline that was recently proposed. This App runs for >15 on topup if both PA and AP dwi files are provided. It detects bvecs flipping (dwigradcheck) and update the gradient table accordingly.app-template-python
Public template