Repositories list

• variation-normalization

  Public
  Services and guidelines for normalizing variants

  Python

  •

  MIT License

  •2•11•86•3•Updated Feb 12, 2025Feb 12, 2025

• gene-normalization

  Public
  Services and guidelines for normalizing genes

  bioinformaticsgeneticsbiomedical-informatics+ 1precision-medicine

  Python

  •

  MIT License

  •3•2•30•2•Updated Feb 11, 2025Feb 11, 2025

• metakb

  Public
  Central repository for the VICC metakb web application

  Python

  •

  MIT License

  •5•15•64•9•Updated Feb 11, 2025Feb 11, 2025

• evidence-normalization

  Public
  Service for normalizing evidence

  Python

  •

  MIT License

  •0•1•4•0•Updated Feb 3, 2025Feb 3, 2025

• therapy-normalization

  Public
  Services and guidelines for normalizing drug and other therapy terms

  bioinformaticsbioinformatics-dataprecision-medicine

  Python

  •

  MIT License

  •3•10•52•1•Updated Jan 30, 2025Jan 30, 2025

• disease-normalization

  Public
  Services and guidelines for normalizing disease terms

  pythonbioinformaticsbiomedical-informatics+ 2precision-medicinedisease-classification

  Python

  •

  MIT License

  •0•6•25•1•Updated Jan 29, 2025Jan 29, 2025

• fusor

  Public
  Data classes and constructor tools supporting the VICC Gene Fusion Curation project

  Python

  •

  MIT License

  •0•0•14•3•Updated Jan 29, 2025Jan 29, 2025

• fusion-curation

  Public
  TypeScript

  •

  MIT License

  •0•2•47•1•Updated Jan 4, 2025Jan 4, 2025

• gene-harmony-analysis

  Public
  Jupyter Notebook

  •

  MIT License

  •0•3•7•1•Updated Nov 12, 2024Nov 12, 2024

• fusions

  Public
  A repository for tracking documents, issues, and tools for the VICC / ClinGen gene fusion curation SOP

  0•0•7•1•Updated Oct 26, 2024Oct 26, 2024

• cancervariants.org

  Public
  Website for Variant Interpretation for Cancer Consortium:

  JavaScript

  •

  MIT License

  •8•4•8•2•Updated Jun 21, 2024Jun 21, 2024

• compose

  Public
  Runs metakb services in containers using docker compose.

  Python

  •1•0•0•3•Updated Apr 9, 2024Apr 9, 2024

• vrs_cyto

  Public
  GA4GH-VRS analysis and export of the Atlas of Genetics and Cytogenetics in Oncology and Haematology

  Jupyter Notebook

  •

  MIT License

  •0•2•0•0•Updated Mar 19, 2022Mar 19, 2022

• biothingsMetakb

  Public
  BioThings Studio extension

  Python

  •0•0•0•0•Updated Aug 25, 2021Aug 25, 2021

• va-testing

  Public
  A repository for testing and validation of GA4GH VA proposals on VICC data

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Apr 22, 2020Apr 22, 2020