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@cas-bioinf Bioinformatics @ Institute of Microbiology of the Czech Academy of Sciences

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    18 repositories

    • RibosomeProfiling

      Public
      Methods and scripts that we use for analyzing RiboSeq data
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • Scoe_SigE_ChIP-seq

      Public
      Code for Streptomyces coelicolor SigE ChIP-seq motif analysis
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 11, 2023Dec 11, 2023

    • prpf8

      Public
      biostatisticsrt-pcrprpf8
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 31, 2023Mar 31, 2023

    • SBCDeseq2

      Public
      Simulation-based calibration of DESeq2 results
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • rboAnalyzer

      Public
      Tool for analysing BLAST output for ncRNA sequences
      rnablastrna-structure-predictionblast-search
      Python
      •
      GNU General Public License v2.0
      •2•1•0•0•Updated May 19, 2022May 19, 2022

    • web-core-facility

      Public
      Web site of the bioinformatics core facility at IMIC CAS
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 6, 2022May 6, 2022

    • covid19retrospective

      Public
      R
      •
      Other
      •0•9•0•0•Updated Sep 7, 2021Sep 7, 2021

    • metagenboot

      Public
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 17, 2021Feb 17, 2021

    • chrnb2_striatum

      Public
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 7, 2021Jan 7, 2021

    • statistical-simulations

      Public
      A collection of small notebooks showing some statistical properties via simulation
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Dec 9, 2020Dec 9, 2020

    • nanotubes-death

      Public
      Supplementary statistical analysis for the paper "Bacterial nanotubes are a manifestation of cell death"
      Apache License 2.0
      •0•0•0•0•Updated Aug 25, 2020Aug 25, 2020

    • community

      Public
      Common resources for bioinformatics community in Prague
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 17, 2019May 17, 2019

    • genexpi

      Public
      Gene Network Inference from Expression Time Series
      time-seriesgene-expressioncytoscapegene-network-inference
      HTML
      •
      GNU Lesser General Public License v3.0
      •1•2•0•0•Updated Feb 12, 2019Feb 12, 2019

    • helD

      Public
      MIT License
      •0•0•0•0•Updated Oct 5, 2018Oct 5, 2018

    • genexpi-stan

      Public
      A Bayesian model of gene regulation
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•0•0•Updated Sep 4, 2018Sep 4, 2018

    • cy-dataseries

      Public
      A Cytoscape plugin for handling series of data (time series, repeated measurements, ...)
      Java
      •
      GNU Lesser General Public License v3.0
      •1•3•8•0•Updated Apr 18, 2018Apr 18, 2018

    • suboptimalstructures

      Public
      WIP webserver for an RNA analysis tool - finding homologs through suboptimal structures.
      Elm
      •
      GNU Lesser General Public License v3.0
      •0•1•0•0•Updated Dec 19, 2017Dec 19, 2017

    • bsubtilis-web

      Public
      Web visualisation of the regulatory network of Bacillus subtilis determined in our research.
      JavaScript
      •0•0•0•0•Updated Jan 23, 2017Jan 23, 2017