{"payload":{"pageCount":4,"repositories":[{"type":"Public","name":"PPT","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-16T01:15:45.240Z"}},{"type":"Public","name":"ML-Bench","owner":"gersteinlab","isFork":false,"description":"The Official Repo of ML-Bench: Evaluating Large Language Models and Agents for Machine Learning Tasks on Repository-Level Code (https://arxiv.org/abs/2311.09835)","allTopics":["code-generation","gpt-4","llm"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":351,"forksCount":7,"license":"MIT License","participation":[0,0,0,0,0,0,0,16,15,0,2,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,3,0,5,103,3,1,0,0,0,1,0,0,0,2,0,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T16:58:01.513Z"}},{"type":"Public","name":"GraphPartition_SBGNN","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-20T16:02:25.861Z"}},{"type":"Public","name":"entexBERT-paper","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,2,0,0,0,0,0,1,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-17T21:53:23.951Z"}},{"type":"Public","name":"cbb752b25","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-15T13:50:45.240Z"}},{"type":"Public","name":"chronODE","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-13T13:54:30.018Z"}},{"type":"Public","name":"MIMIR","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-06T11:43:50.552Z"}},{"type":"Public","name":"step-back-profiling","owner":"gersteinlab","isFork":false,"description":"","allTopics":["llms","personalized-generation"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-02T06:07:43.091Z"}},{"type":"Public","name":"cbb752b23","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-29T14:50:57.705Z"}},{"type":"Public","name":"shiny-dim-reduction","owner":"gersteinlab","isFork":false,"description":"This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":[0,0,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,5,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-28T03:22:05.779Z"}},{"type":"Public","name":"LatentDAG","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-22T21:55:58.432Z"}},{"type":"Public","name":"MolLM","owner":"gersteinlab","isFork":false,"description":"A Unified Language Model to Integrate Biomedical Text with 2D and 3D Molecular Representations","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":20,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-19T08:27:12.980Z"}},{"type":"Public","name":"GenAI4Drug","owner":"gersteinlab","isFork":false,"description":"","allTopics":["molecule","protein","drug-discovery","genai"],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":49,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-18T23:16:50.302Z"}},{"type":"Public","name":"Struc-Bench","owner":"gersteinlab","isFork":false,"description":"","allTopics":["llm"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":42,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T15:47:44.065Z"}},{"type":"Public","name":"BioCoder","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":37,"forksCount":11,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-01T02:16:10.235Z"}},{"type":"Public","name":"LICENSE","owner":"gersteinlab","isFork":false,"description":"License that applies to Gerstein Lab repositories.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-10T12:36:53.639Z"}},{"type":"Public","name":"MedAgents","owner":"gersteinlab","isFork":false,"description":"","allTopics":["medical-application","medical-question-answering","llm","llm-agent","llm-agents"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":205,"forksCount":25,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-27T02:02:24.600Z"}},{"type":"Public","name":"PsychENCODE_SingleCell_Integrative","owner":"gersteinlab","isFork":false,"description":"Integrative Analyses across 388 human brain samples at single-cell resolution","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":3,"starsCount":10,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-21T17:07:34.867Z"}},{"type":"Public","name":"PLIGHT","owner":"gersteinlab","isFork":false,"description":"Privacy Leakage through Inference across Genotypic HMM Trajectories","allTopics":["privacy","genomics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-20T21:58:18.703Z"}},{"type":"Public","name":"fmgene","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-17T20:06:09.345Z"}},{"type":"Public","name":"MOBI","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-31T23:32:11.050Z"}},{"type":"Public","name":"Musevo","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-25T21:23:07.908Z"}},{"type":"Public","name":"ThermoNet","owner":"gersteinlab","isFork":false,"description":"ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep 3D convolutional neural networks. ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":107,"forksCount":20,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-20T16:30:08.950Z"}},{"type":"Public","name":"ABCD","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-02T22:28:50.511Z"}},{"type":"Public","name":"idash23bc","owner":"gersteinlab","isFork":false,"description":"Solution to Track 2 of the 2023 iDASH competition","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-01T01:38:45.047Z"}},{"type":"Public","name":"Factual_ClinicalSumm","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-15T03:05:37.024Z"}},{"type":"Public","name":"PeoplePage","owner":"gersteinlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-10T15:31:58.918Z"}},{"type":"Public","name":"MEDIQA-Chat-2023","owner":"gersteinlab","isFork":false,"description":"MEDIQA-Chat-2023 GersteinLab solution","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-09T05:37:02.530Z"}},{"type":"Public","name":"REPIC-copy","owner":"gersteinlab","isFork":true,"description":"Copy of REliable PIcking by Consensus (REPIC)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-06T19:55:14.256Z"}},{"type":"Public","name":"exceRpt","owner":"gersteinlab","isFork":true,"description":"Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":21,"forksCount":25,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-05T09:52:12.714Z"}}],"repositoryCount":118,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"gersteinlab repositories"}