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    • Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.
      Ruby
      0600Updated Dec 24, 2024Dec 24, 2024
    • Hatch plugin for generating Python files from Protocol Buffers .proto files
      Python
      Other
      0621Updated Dec 23, 2024Dec 23, 2024
    • modkit

      Public
      A bioinformatics tool for working with modified bases
      Rust
      Other
      81581100Updated Dec 21, 2024Dec 21, 2024
    • Dorado Documentation
      Python
      Other
      0200Updated Dec 18, 2024Dec 18, 2024
    • dorado

      Public
      Oxford Nanopore's Basecaller
      C++
      Other
      685591192Updated Dec 17, 2024Dec 17, 2024
    • Protobuf and gRPC specifications for the MinKNOW API
      Python
      Other
      1357291Updated Dec 11, 2024Dec 11, 2024
    • Pod5: a high performance file format for nanopore reads.
      C++
      Other
      19139303Updated Nov 25, 2024Nov 25, 2024
    • Python
      Other
      0330Updated Nov 8, 2024Nov 8, 2024
    • medaka

      Public
      Sequence correction provided by ONT Research
      Python
      Other
      76430140Updated Oct 11, 2024Oct 11, 2024
    • Read Until client library for Nanopore Sequencing
      Python
      Other
      1310300Updated Sep 25, 2024Sep 25, 2024
    • remora

      Public
      Methylation/modified base calling separated from basecalling.
      Python
      Other
      2116271Updated Sep 17, 2024Sep 17, 2024
    • pomoxis

      Public
      Analysis components from Oxford Nanopore Research
      Python
      Other
      2393101Updated Sep 4, 2024Sep 4, 2024
    • bonito

      Public
      A PyTorch Basecaller for Oxford Nanopore Reads
      Python
      Other
      122401292Updated Jul 25, 2024Jul 25, 2024
    • rerio

      Public
      Research release basecalling models and configurations
      Python
      Other
      1010321Updated Jun 18, 2024Jun 18, 2024
    • sqlpad

      Public
      Web-based SQL editor run in your own private cloud. Supports MySQL, Postgres, SQL Server, Vertica, Crate, ClickHouse, Trino, Presto, SAP HANA, Cassandra, Snowflake, BigQuery, SQLite, and more with ODBC
      JavaScript
      MIT License
      789000Updated May 14, 2024May 14, 2024
    • Blitzing Fast CTC Beam Search Decoder
      Rust
      MIT License
      2717860Updated May 13, 2024May 13, 2024
    • Clair3

      Public
      Clair3 - Integrating pileup and full-alignment for high-performance long-read variant calling
      Python
      30500Updated Mar 25, 2024Mar 25, 2024
    • Cross platform builds for minimap2
      CMake
      1600Updated Mar 20, 2024Mar 20, 2024
    • Python
      Mozilla Public License 2.0
      61621Updated Mar 11, 2024Mar 11, 2024
    • Oxford Nanopore Technologies fast5 API software
      Python
      Other
      29151130Updated Feb 27, 2024Feb 27, 2024
    • Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
      Python
      Other
      1132163Updated Feb 27, 2024Feb 27, 2024
    • ONT modified git://nv-tegra.nvidia.com/linux-nvidia.git.
      C
      0000Updated Oct 12, 2023Oct 12, 2023
    • pyspoa

      Public
      Python bindings to spoa
      Python
      Other
      31830Updated Oct 4, 2023Oct 4, 2023
    • An experimental language for a JSON query, transformation and streaming
      TypeScript
      Mozilla Public License 2.0
      0260Updated Jul 28, 2023Jul 28, 2023
    • u-boot

      Public
      C
      1000Updated Jun 30, 2023Jun 30, 2023
    • ONT fork of Linux for NVIDIA Tegra based devices
      C
      Other
      1000Updated Jun 30, 2023Jun 30, 2023
    • Predictive kmer models for development use
      Mozilla Public License 2.0
      185400Updated Jun 6, 2023Jun 6, 2023
    • Splitting of sequence reads by internal adapter sequence search
      Python
      Other
      752210Updated May 30, 2023May 30, 2023
    • onesie

      Public
      A Linux device-driver for the MinION-mk1C
      C
      GNU General Public License v2.0
      0100Updated May 25, 2023May 25, 2023
    • megalodon

      Public
      Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
      Python
      Other
      30198450Updated May 4, 2023May 4, 2023