Skip to content

@ncbi NCBI - National Center for Biotechnology Information/NLM/NIH

Change the repository type filter

All

    Repositories list

    158 repositories

    • sra-tools

      Public
      SRA Tools
      C
      •
      Other
      •255•1.2k•84•7•Updated Feb 28, 2025Feb 28, 2025

    • vadr

      Public
      Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
      Perl
      •
      Other
      •28•107•7•0•Updated Feb 28, 2025Feb 28, 2025

    • ncbi-cxx-toolkit-public

      Public
      NCBI C++ Toolkit package sources
      C++
      •
      Other
      •28•62•1•0•Updated Feb 28, 2025Feb 28, 2025

    • cxx-toolkit

      Public
      HTML
      •
      The Unlicense
      •47•19•0•0•Updated Feb 27, 2025Feb 27, 2025

    • datasets

      Public
      NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
      ncbigenomics-data
      Jupyter Notebook
      •
      Other
      •47•385•22•0•Updated Feb 27, 2025Feb 27, 2025

    • ncbi-vdb

      Public
      ncbi-vdb
      C
      •
      Other
      •41•90•11•3•Updated Feb 27, 2025Feb 27, 2025

    • stxtyper

      Public
      StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
      bioinformaticsgenomicspathogenescherichia-colibioinformatics-toolvirulence-genes
      C++
      •
      Other
      •6•12•1•1•Updated Feb 26, 2025Feb 26, 2025

    • tree-tool

      Public
      Incremental building of phylogenetic distance trees
      bioinformaticsevolutionphylogenetic-treesdata-analysisdistance-measuresbioinformatics-tool
      HTML
      •
      Other
      •9•21•0•1•Updated Feb 25, 2025Feb 25, 2025

    • AF2_benchmark

      Public
      Jupyter Notebook
      •4•14•0•0•Updated Feb 25, 2025Feb 25, 2025

    • amr

      Public
      AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
      genomicspathogenantibiotic-resistancebioinformatics
      C++
      •
      Other
      •45•293•11•0•Updated Feb 21, 2025Feb 21, 2025

    • elastic-blast-docs

      Public
      ElasticBLAST documentation
      Other
      •6•4•0•0•Updated Feb 20, 2025Feb 20, 2025

    • ncbi-logging

      Public
      Log monitoring and gathering infrastructure to feed analytics
      C++
      •9•5•0•1•Updated Feb 14, 2025Feb 14, 2025

    • icn3d

      Public
      web-based protein structure viewer and analysis tool interactively or in batch mode
      nodejsdelphiwebglvrarjupyter-notebookchemicalproteinsnpnucleotide
      JavaScript
      •
      Other
      •44•158•6•2•Updated Feb 13, 2025Feb 13, 2025

    • ncbi-cxx-toolkit-conan

      Public
      NCBI C++ Toolkit package recipe
      Python
      •9•8•0•0•Updated Feb 7, 2025Feb 7, 2025

    • BioREx

      Public
      Python
      •10•32•2•0•Updated Feb 7, 2025Feb 7, 2025

    • ncbi-vdb-conan

      Public
      Conan package recipe for NCBI VDB Toolkit
      Python
      •2•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • pgap

      Public
      NCBI Prokaryotic Genome Annotation Pipeline
      Common Workflow Language
      •
      Other
      •94•328•9•0•Updated Jan 29, 2025Jan 29, 2025

    • ngs-tools

      Public
      C++
      •
      Other
      •26•105•9•4•Updated Jan 15, 2025Jan 15, 2025

    • elastic-blast

      Public
      ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
      bioinformaticsblastncbi
      Python
      •
      Other
      •18•50•3•1•Updated Jan 13, 2025Jan 13, 2025

    • DbGaP-FHIR-API-Docs

      Public
      The documentation repository for the dbGaP FHIR API.
      documentationfhirphenotypes
      Jupyter Notebook
      •
      Other
      •4•10•5•0•Updated Jan 7, 2025Jan 7, 2025

    • egapx

      Public
      Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
      Nextflow
      •
      Other
      •13•115•9•0•Updated Jan 7, 2025Jan 7, 2025

    • ribovore

      Public
      Perl
      •
      Other
      •6•15•3•0•Updated Dec 16, 2024Dec 16, 2024

    • BAMscale

      Public
      BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
      C
      •
      Other
      •18•67•1•1•Updated Dec 4, 2024Dec 4, 2024

    • clinvar

      Public
      ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov' with any questions or comments.
      HTML
      •16•76•4•0•Updated Nov 25, 2024Nov 25, 2024

    • fcs

      Public
      Foreign Contamination Screening caller scripts and documentation
      Other
      •17•124•12•0•Updated Nov 19, 2024Nov 19, 2024

    • nongenomic-evolution-of-tumor-subclones

      Public
      Python
      •2•2•0•0•Updated Nov 5, 2024Nov 5, 2024

    • SpaceProfiler

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Oct 30, 2024Oct 30, 2024

    • SKESA

      Public
      SKESA assembler
      C++
      •
      Other
      •21•114•18•2•Updated Oct 11, 2024Oct 11, 2024

    • workshop-asm-ngs-2024

      Public
      Pre-conference workshop for ASM NGS 2024
      2•6•0•0•Updated Oct 10, 2024Oct 10, 2024

    • ncbi_doc_template

      Public
      CSS
      •
      The Unlicense
      •7•3•0•0•Updated Oct 9, 2024Oct 9, 2024