SeaFlow@UW

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15 repositories

fsc-poc-calibration
Public
Conversion from light scattering measured by SeaFlow to carbon per cell
reproducible-research flow-cytometry seaflow carbon-quotas light-scatter-measurements
R
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MIT License
•0•1•0•0•Updated Nov 6, 2024Nov 6, 2024
seaflow-website
Public
seaflow data website
seaflow seaflow-website
TeX
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MIT License
•0•0•0•0•Updated Nov 6, 2024Nov 6, 2024
flowkernel-project
Public
R
•2•0•0•0•Updated Aug 10, 2024Aug 10, 2024
mpm-workflow
Public
SeaFlow matrix population model workflow
Python
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MIT License
•0•1•0•0•Updated Jun 14, 2024Jun 14, 2024
popcycle
Public
Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow
reproducible-research oceanography flow-cytometry phytoplankton workflow seaflow
R
•
MIT License
•8•9•8•0•Updated Jun 14, 2024Jun 14, 2024
seaflowpy
Public
Python package with library and CLI tool for analyzing SeaFlow data
python reproducible-research oceanography flow-cytometry seaflow
Python
•
GNU General Public License v3.0
•3•5•1•0•Updated May 30, 2024May 30, 2024
seaflow-sfl
Public
SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.
reproducible-research seaflow cruise ship-data seaflow-instrument
HTML
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MIT License
•2•2•0•1•Updated Jan 26, 2024Jan 26, 2024
seaflow-filter
Public
reproducible-research seaflow
R
•
MIT License
•1•0•0•0•Updated Jan 26, 2024Jan 26, 2024
realtime-dbs
Public
SeaFlow realtime analysis parameter databases
MIT License
•1•0•0•0•Updated Jan 18, 2024Jan 18, 2024
seaflow-virtualcore
Public
Calibration of SeaFlow's Virtual Core
reproducible-research flow-cytometry seaflow
R
•
MIT License
•0•1•0•0•Updated Jan 8, 2024Jan 8, 2024
seaflog
Public
Command-line tool and Go library for parsing SeaFlow instrument v1 log files
Go
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MIT License
•0•0•0•0•Updated Jan 4, 2024Jan 4, 2024
SeaFlow_cruise_report
Public
knitR and supporting documents to build an R and LaTeX cruise report for SeaFlow data.
TeX
•1•1•0•0•Updated Oct 17, 2023Oct 17, 2023
flowmix
Public
Statistical analysis of ocean flow cytometry data.
HTML
•3•0•0•0•Updated Aug 30, 2022Aug 30, 2022
bayesian-matrix-population-model
Public
A Bayesian approach to size-structured matrix population model to estimate daily rates of phytoplankton cell division, growth and respiration
Jupyter Notebook
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MIT License
•2•0•0•0•Updated Nov 19, 2021Nov 19, 2021
fsc-size-calibration
Public
Conversion from light scattering measured by SeaFlow to cell diameter
reproducible-research flow-cytometry seaflow cell-diameter scattering-measurements
R
•
MIT License
•0•3•0•0•Updated Aug 5, 2020Aug 5, 2020