{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"snakemake-workflow-catalog","owner":"snakemake","isFork":false,"description":"A statically generated catalog of available Snakemake workflows","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":5,"starsCount":30,"forksCount":10,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T23:08:00.813Z"}},{"type":"Public","name":"snakemake-interface-storage-plugins","owner":"snakemake","isFork":false,"description":"This package provides a stable interface for interactions between Snakemake and its storage plugins.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":3,"starsCount":1,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T19:03:06.121Z"}},{"type":"Public","name":"snakemake","owner":"snakemake","isFork":false,"description":"This is the development home of the workflow management system Snakemake. For general information, see","allTopics":["snakemake","reproducibility","workflow-management"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":86,"issueCount":1033,"starsCount":2241,"forksCount":545,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T10:54:30.085Z"}},{"type":"Public","name":"snakemake-wrappers","owner":"snakemake","isFork":false,"description":"This is the development home of the Snakemake wrapper repository, see","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":25,"issueCount":34,"starsCount":213,"forksCount":183,"license":null,"participation":[16,22,8,22,9,389,29,57,3,13,18,86,15,16,13,8,20,64,12,7,30,11,30,8,18,15,16,6,15,90,18,10,8,2,22,20,10,10,11,37,9,12,2,19,5,12,11,13,25,6,77,21],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T09:44:30.065Z"}},{"type":"Public","name":"snakemake-hpc-teaching-material","owner":"snakemake","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":3,"issueCount":14,"starsCount":5,"forksCount":2,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-19T11:00:00.196Z"}},{"type":"Public","name":"snakemake-storage-plugin-xrootd","owner":"snakemake","isFork":false,"description":"A Snakemake storage plugin for handling input and output via XRootD","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-14T13:28:12.881Z"}},{"type":"Public","name":"snakemake-executor-plugin-slurm","owner":"snakemake","isFork":false,"description":"A Snakemake executor plugin for submitting jobs to a SLURM cluster","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":23,"starsCount":14,"forksCount":17,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T19:57:55.032Z"}},{"type":"Public","name":"snakemake-interface-common","owner":"snakemake","isFork":false,"description":"Common functions and classes for Snakemake and its plugins","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":0,"forksCount":3,"license":"MIT License","participation":[21,1,9,6,3,2,0,2,0,3,8,0,0,0,0,0,2,3,6,0,5,4,0,0,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,0,0,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-09T14:24:49.763Z"}},{"type":"Public","name":"snakemake-executor-plugin-tes","owner":"snakemake","isFork":false,"description":"A Snakemake executor plugin for submitting jobs via GA4GH TES.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":3,"starsCount":0,"forksCount":1,"license":"MIT License","participation":[0,0,0,0,0,7,7,0,0,3,4,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-07T18:23:35.382Z"}},{"type":"Public","name":"snakemake-executor-plugin-aws-batch","owner":"snakemake","isFork":false,"description":"A Snakemake executor plugin for AWS Batch","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":3,"starsCount":3,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-07T18:20:32.361Z"}},{"type":"Public","name":"snakemake-executor-plugin-cluster-sync","owner":"snakemake","isFork":false,"description":"A Snakemake executor plugin for generic cluster jobs that are executed synchronously.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-07T18:15:30.966Z"}},{"type":"Public","name":"snakemake-executor-plugin-google-lifesciences","owner":"snakemake","isFork":false,"description":"A Snakemake executor plugin for google lifesciences.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-07T18:14:54.410Z"}},{"type":"Public","name":"snakemake-executor-plugin-flux","owner":"snakemake","isFork":false,"description":"Snakemake custom executor plugin for Flux Framework (under development)","allTopics":["flux","snakemake","flux-framework"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-07T18:14:48.529Z"}},{"type":"Public","name":"snakemake-executor-plugin-kubernetes","owner":"snakemake","isFork":false,"description":"A snakemake executor plugin for submission of jobs to Kubernetes","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":3,"starsCount":2,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-07T18:11:37.840Z"}},{"type":"Public","name":"snakemake-executor-plugin-drmaa","owner":"snakemake","isFork":false,"description":"A snakemake executor plugin for submission of jobs via DRMAA.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-07T18:11:13.772Z"}},{"type":"Public","name":"snakemake-executor-plugin-cluster-generic","owner":"snakemake","isFork":false,"description":"Generic cluster executor for Snakemake","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":2,"starsCount":1,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-07T18:10:36.001Z"}},{"type":"Public","name":"snakemake-executor-plugin-azure-batch","owner":"snakemake","isFork":false,"description":"A Snakemake executor plugin for submitting jobs to Microsoft Azure Batch.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-07T18:03:56.549Z"}},{"type":"Public","name":"snakemake-executor-plugin-slurm-jobstep","owner":"snakemake","isFork":false,"description":"A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-07T17:17:30.559Z"}},{"type":"Public","name":"snakemake-storage-plugin-http","owner":"snakemake","isFork":false,"description":"Snakemake storage plugin for donwloading input files from HTTP(s).","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":3,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-06T09:26:17.016Z"}},{"type":"Public","name":"snakemake-storage-plugin-gcs","owner":"snakemake","isFork":false,"description":"A Snakemake storage plugin for Google Cloud Storage","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":1,"starsCount":4,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-20T13:41:06.261Z"}},{"type":"Public","name":"snakemake-storage-plugin-fs","owner":"snakemake","isFork":false,"description":"A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":2,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-19T16:42:09.326Z"}},{"type":"Public","name":"snakemake-interface-executor-plugins","owner":"snakemake","isFork":false,"description":"This package provides a stable interface for interactions between Snakemake and its executor plugins.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":6,"starsCount":7,"forksCount":9,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-16T15:53:52.671Z"}},{"type":"Public","name":"snakemake-interface-report-plugins","owner":"snakemake","isFork":false,"description":"The interface for Snakemake report plugins.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T14:45:50.136Z"}},{"type":"Public","name":"poetry-snakemake-plugin","owner":"snakemake","isFork":false,"description":"Plugin for poetry that adds snakemake specific functionality","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T14:44:22.135Z"}},{"type":"Public","name":"snakemake-storage-plugin-irods","owner":"snakemake","isFork":false,"description":"Snakemake storage plugin for handling input and output on iRODS","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T13:14:13.415Z"}},{"type":"Public","name":"snakemake-executor-plugin-googlebatch","owner":"snakemake","isFork":false,"description":"Snakemake executor plugin for Google Batch","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":7,"starsCount":3,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T11:29:31.806Z"}},{"type":"Public","name":"snakemake-storage-plugin-webdav","owner":"snakemake","isFork":false,"description":"A Snakemake storage plugin for handling input and output via webdav","allTopics":["webdav","snakemake-plugin"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T09:16:19.254Z"}},{"type":"Public","name":"snakemake-storage-plugin-s3","owner":"snakemake","isFork":false,"description":"A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":4,"starsCount":2,"forksCount":11,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T08:37:56.863Z"}},{"type":"Public","name":"snakemake-storage-plugin-azure","owner":"snakemake","isFork":false,"description":"Snakemake storage plugin for Azure Blob Storage","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-06T21:13:33.294Z"}},{"type":"Public","name":"snakefmt","owner":"snakemake","isFork":false,"description":"The uncompromising Snakemake code formatter","allTopics":["python","formatter","fmt","bioinformatics","code","black","codeformatter","snakemake"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":16,"starsCount":147,"forksCount":28,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-09T23:27:04.878Z"}}],"repositoryCount":50,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"snakemake repositories"}