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    41 repositories

    • tatonetti-lab.github.io

      Public
      Tatonetti Lab Website
      HTML
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • onsides

      Public
      A resource of adverse drug effects extracted from FDA structured product labels
      Jupyter Notebook
      •
      MIT License
      •4•63•33•0•Updated Dec 17, 2024Dec 17, 2024

    • disrupt

      Public
      SU2C Disrupt IT Team Github Repository
      Python
      •0•2•2•0•Updated Dec 5, 2024Dec 5, 2024

    • webgwas-backend

      Public
      WebGWAS: Instant, free online genome-wide association studies. Server backend code.
      gwasgenetics
      Rust
      •1•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • dconvae

      Public
      Deconfounding Variational Autoencoder for Drug Safety Pharmacovigilance Analysis
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • onsides-web

      Public
      OnSIDES Website
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • biogrok

      Public
      Exploring grokking in biologically relevant algorithms
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • offsides

      Public
      A resource for drug side effects associations not listed on the official labels
      Jupyter Notebook
      •
      MIT License
      •0•0•1•0•Updated Oct 28, 2024Oct 28, 2024

    • maxgcp

      Public
      Maximum genetic component phenotyping. An advanced method for defining observational phenotypes using genetic information.
      Python
      •
      MIT License
      •0•2•0•0•Updated Oct 21, 2024Oct 21, 2024

    • nsides-release

      Public
      Analysis notebooks and database interaction scripts for the nsides project
      Jupyter Notebook
      •9•18•3•0•Updated Sep 13, 2024Sep 13, 2024

    • chappy

      Public
      Python
      •0•0•5•0•Updated Sep 6, 2024Sep 6, 2024

    • indirect-gwas

      Public
      Fast GWAS on linear combinations of traits using only summary statistics
      gwasgeneticsmulti-trait-analysis
      Rust
      •
      MIT License
      •0•6•0•0•Updated Aug 29, 2024Aug 29, 2024

    • tnm-stage-classifier

      Public
      Extract TNM cancer staging from pathology notes.
      Jupyter Notebook
      •
      MIT License
      •3•6•0•0•Updated Aug 2, 2024Aug 2, 2024

    • causal-drug-ades

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • maxgcp-analysis

      Public
      Boosting the genetic signal in phenotype definitions
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Jul 23, 2024Jul 23, 2024

    • onsides-task1

      Public
      Evaluation of GPT methods for ADE term identification
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • tcga-path-reports

      Public
      TCGA Pathology Reports in Machine Readable Text
      Python
      •
      MIT License
      •3•33•0•0•Updated May 30, 2024May 30, 2024

    • indirect-gwas-analysis

      Public
      Accerating pan-biobank GWAS using phenotype projections
      gwasgeneticsphenotypes
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Apr 25, 2024Apr 25, 2024

    • sex_risks

      Public
      Investigating drugs with sex specific risks of adverse drug reactions
      Jupyter Notebook
      •
      MIT License
      •4•8•0•0•Updated Mar 29, 2024Mar 29, 2024

    • llm-psm

      Public
      MIT License
      •0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

    • covid-h2o

      Public
      Scripts and analysis to evaluate SARS-CoV-2 heritability in the CUIMC/NYP health record data.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 29, 2023Nov 29, 2023

    • utilization-score

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • riftehr

      Public
      RIFTEHR
      TSQL
      •
      MIT License
      •6•8•1•0•Updated Nov 15, 2023Nov 15, 2023

    • predict-covid-effects

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 27, 2023Jun 27, 2023

    • nsides

      Public
      Exploring drug-drug interactions on a massive scale.
      deep-neural-networksdeep-learningkerasosg
      Python
      •
      Other
      •4•3•1•21•Updated Jan 13, 2023Jan 13, 2023

    • h2o

      Public
      Observational Heritability
      Jupyter Notebook
      •2•9•0•0•Updated Dec 14, 2022Dec 14, 2022

    • website

      Public
      TatonettiLab GitHub Pages Website
      MIT License
      •0•0•0•0•Updated Nov 14, 2022Nov 14, 2022

    • onsides-demo

      Public
      Demonstration projects for the OnSIDES Database
      MIT License
      •0•0•0•0•Updated Nov 13, 2022Nov 13, 2022

    • interactionengine

      Public
      Interaction Engine, using ML/AI to guide discovery and validation of drug-drug interactions
      MIT License
      •0•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • tabelize

      Public
      A script to generate an SQL table from a tabular file.
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 16, 2022Apr 16, 2022