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    102 repositories

    • nsc-recommendationsp

      Public
      Python
      •1•0•1•37•Updated Jun 6, 2025Jun 6, 2025

    • digital-form-builder

      Public
      Exploring how to quickly and easily design/prototype/deploy high quality digital forms for UK Gov. Based on the excellent work by DEFRA. Currently maintained by jen+forms@cautionyourblast.com at Caution Your Blast and a community collaboration between FCDO, HO, GDS, DfE, DIT, Version 1
      TypeScript
      •
      MIT License
      •42•2•0•4•Updated Jun 6, 2025Jun 6, 2025

    • api-guidelines

      Public
      UKHSA API design guidelines.
      documentationpatternsstandardsprinciplespracticesapi-guidelinesukhsa
      JavaScript
      •
      MIT License
      •0•3•14•2•Updated Jun 6, 2025Jun 6, 2025

    • devops-terraform-modules

      Public
      UKHSA Terraform Modules to deliver a IaC self-service platform. Repo managed by devops-github-repos
      HCL
      •
      MIT License
      •1•0•0•3•Updated Jun 5, 2025Jun 5, 2025

    • ukhsa-science-research-site-dev

      Public
      HTML
      •
      MIT License
      •5•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • terraform-github-repository

      Public
      Terraform module to configure GitHub repositories
      0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • intreeactive

      Public
      intreeactive is a way to create a single, portable interactive phylogeny using Python and a handful of libraries, with no need for other software or online tools.
      0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

    • PHEindicatormethods

      Public
      R
      •
      GNU General Public License v3.0
      •15•27•12•1•Updated Jun 2, 2025Jun 2, 2025

    • ukhsa-science-research-site

      Public
      HTML
      •
      MIT License
      •5•1•0•0•Updated May 28, 2025May 28, 2025

    • gemmm

      Public
      Python
      •
      Other
      •0•0•0•0•Updated May 22, 2025May 22, 2025

    • ai-blast-genotyping

      Public
      Python
      •0•0•0•0•Updated May 15, 2025May 15, 2025

    • UKHSA-pubhealthbench

      Public
      Evaluation code for the PubHealthBench benchmark.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • epiviz

      Public
      Epidemiological Data Visualisation
      R
      •
      Other
      •0•0•1•0•Updated May 6, 2025May 6, 2025

    • ssi-repo-test

      Public
      testing the use of git-repo-filter
      TSQL
      •0•0•0•0•Updated May 6, 2025May 6, 2025

    • pygom

      Public
      ODE modelling in Python
      Python
      •
      GNU General Public License v2.0
      •20•30•41•3•Updated Apr 29, 2025Apr 29, 2025

    • devops-github-reusable-workflows

      Public
      Repo containing Github Reusable Workflows. Repo managed by devops-github-repos
      0•0•0•3•Updated Apr 10, 2025Apr 10, 2025

    • gpha_mpox_kmer_typing

      Public
      Python
      •0•0•0•1•Updated Apr 9, 2025Apr 9, 2025

    • devops-github-actions

      Public
      Repo containing reusable Github Actions. Repo managed by devops-github-repos
      0•0•0•1•Updated Apr 3, 2025Apr 3, 2025

    • mscape-amr-nf

      Public
      Nextflow process for running AMR detection using Abricate on ONT metagenomic samples
      Nextflow
      •0•1•2•0•Updated Apr 2, 2025Apr 2, 2025

    • ntbs-reporting

      Public
      TSQL
      •0•2•0•0•Updated Apr 1, 2025Apr 1, 2025

    • devops-terraform-example-project

      Public
      Example for demonstrating ECS-based project created using IaC. Repo managed by devops-github-repos
      HCL
      •0•1•0•1•Updated Mar 26, 2025Mar 26, 2025

    • LOMA

      Public
      A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.
      metagenomic-pipelineoxford-nanopore-sequencing
      Nextflow
      •
      GNU General Public License v3.0
      •2•13•2•0•Updated Mar 18, 2025Mar 18, 2025

    • ggbreak

      Public
      One-function R package for adding a y-axis break symbol to a ggplot object
      data-visualization
      R
      •
      Other
      •1•1•0•0•Updated Mar 17, 2025Mar 17, 2025

    • SOMA

      Public
      A Nextflow pipeline designed to classify, align and assemble short-read metagenomic sequencing data.
      Nextflow
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Mar 12, 2025Mar 12, 2025

    • Mustard_and_Finnie

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • winter-2023-24-respiratory-forecasts

      Public
      Repository holding the operational code used to forecast COVID, Influenza & RSV over winter 2023/24
      R
      •2•10•0•0•Updated Jan 14, 2025Jan 14, 2025

    • SmallpoxSomaliaReleased

      Public
      0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • epidm

      Public
      Epidemiological Data Management
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jan 2, 2025Jan 2, 2025

    • devops-terraform-template

      Public template
      . Repo managed by devops-github-repos
      0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • UKHSA-Approved-Tech-and-Tools

      Public
      0•0•0•0•Updated Nov 20, 2024Nov 20, 2024