Repositories list

• SegNext

  Public
  Rethinking Interactive Image Segmentation with Low Latency, High Quality, and Diverse Prompts (CVPR 2024)

  interactive-image-segmentationvision-transformerssegment-anything

  Python

  •

  MIT License

  •13•95•2•0•Updated Aug 6, 2025Aug 6, 2025

• SimpleClick

  Public
  SimpleClick: Interactive Image Segmentation with Simple Vision Transformers (ICCV 2023)

  pytorchinteractive-segmentationmasked-autoencoder+ 1vision-transformers

  Python

  •

  MIT License

  •41•239•4•1•Updated Aug 5, 2025Aug 5, 2025

• ICON

  Public
  A library for performing image registration using deep learning, regularized by inverse consistency

  deep-learningmedical-imagingregistration+ 1image-registration

  Jupyter Notebook

  •

  Other

  •14•52•8•7•Updated Jul 30, 2025Jul 30, 2025

• pain-disparities-resnet

  Public
  Code used to train and evaluate model used in Master's paper on evaluating pain disparities (following Pierson et. al)

  Python

  •0•0•0•0•Updated Jul 15, 2025Jul 15, 2025

• Awesome-Foundation-Models

  Public
  A curated list of foundation models for vision and language tasks

  transformer-modelsvision-transformermultimodal-models+ 2foundation-modelslarge-language-models

  56•1.1k•0•0•Updated Jun 23, 2025Jun 23, 2025

• uniGradICON

  Public
  uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)

  deep-learningmedical-image-analysismedical-image-registration

  Python

  •

  Apache License 2.0

  •13•156•18•4•Updated Jun 4, 2025Jun 4, 2025

• equivariant_reg_2

  Public
  equivariant_reg_2

  Jupyter Notebook

  •0•0•0•0•Updated Jun 4, 2025Jun 4, 2025

• dgir

  Public
  Guiding Registration with Emergent Similarity from Pre-Trained Diffusion Models (MICCAI 2025)

  0•0•0•0•Updated May 20, 2025May 20, 2025

• uncbiag-academic-kickstart

  Public
  TeX

  •

  MIT License

  •0•0•0•0•Updated May 19, 2025May 19, 2025

• LiVOS

  Public
  LiVOS: Light Video Object Segmentation with Gated Linear Matching (CVPR 2025)

  deep-learningsegmentationvideo-segmentation+ 2video-object-segmentationsemi-supervised-video-object-segmentation

  Python

  •

  MIT License

  •2•37•4•0•Updated Apr 17, 2025Apr 17, 2025

• anatomix_gradicon

  Public
  anatomix_gradicon

  Python

  •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

• OAI_analysis_2

  Public
  Image analysis approaches to analyze the OAI magnetic resonance images

  registrationsegmentationatlas+ 3osteoarthritiscartilagedeep-learning

  Jupyter Notebook

  •

  Other

  •12•26•16•3•Updated Dec 19, 2024Dec 19, 2024

• SlicerUniGradICON

  Public
  Slicer Extension for uniGradICON: A Foundation Model for Medical Image Registration

  image-registration3d-slicer-extension

  Python

  •

  Apache License 2.0

  •1•7•1•0•Updated Dec 12, 2024Dec 12, 2024

• ExtensionsIndex

  Public
  Slicer extensions index

  Python

  •265•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• NePhi

  Public
  Official repository for NePhi: Neural Deformation Fields for Approximately Diffeomorphic Medical Image Registration (ECCV 2024)

  JavaScript

  •

  MIT License

  •1•8•0•0•Updated Sep 30, 2024Sep 30, 2024

• OAI_analysis

  Public
  OAI image analysis pipeline

  Python

  •2•7•0•1•Updated Sep 2, 2024Sep 2, 2024

• mermaid

  Public
  Image registration using pytorch

  Python

  •

  Other

  •29•183•8•2•Updated Jul 25, 2024Jul 25, 2024

• iSegFormer

  Public
  iSegFormer: Interactive Image/Volume Segmentation using Vision Transformers (MICCAI 2022)

  pytorchmedical-image-segmentationinteractive-segmentation+ 1vision-transformers

  Python

  •5•29•0•0•Updated Jul 3, 2024Jul 3, 2024

• PIANO

  Public
  Python

  •

  Apache License 2.0

  •0•3•0•0•Updated Jun 8, 2024Jun 8, 2024

• LiftReg

  Public
  Official repository for LiftReg: Limited Angle 2D/3D Deformable Registration.

  deep-learning3d-reconstructionmedical-image-registration+ 1backprojection

  Python

  •3•18•3•0•Updated May 31, 2024May 31, 2024

• SegGuidedMMReg

  Public
  Repository for 'Multimodal Image Registration Guided by Few Segmentations from One Modality'

  Python

  •

  Other

  •1•2•0•0•Updated May 28, 2024May 28, 2024

• mouse_brain_translucence

  Public
  Jupyter Notebook

  •1•2•0•0•Updated May 3, 2024May 3, 2024

• NAISR

  Public
  NAISR: A 3D Neural Additive Model for Interpretable Shape Representation

  3d-reconstruction3d-modelsshape-analysis+ 4interpretable-aiexplainable-aixaiimplicit-neural-representation

  Python

  •

  MIT License

  •3•17•0•2•Updated Apr 29, 2024Apr 29, 2024

• uniGradICON_Slicer

  Public
  Python

  •0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

• UniLMMV

  Public
  Python

  •1•8•0•0•Updated Mar 25, 2024Mar 25, 2024

• 2D3DFluidReg

  Public
  This is the repository for paper "Fluid Registration Between Lung CT and Stationary Chest Tomosynthesis Images"

  Python

  •0•3•0•0•Updated Mar 1, 2024Mar 1, 2024

• ByConstructionICON

  Public
  Jupyter Notebook

  •1•4•0•0•Updated Feb 5, 2024Feb 5, 2024

• dgc

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 20, 2023Dec 20, 2023

• diffusion-3D-discovery

  Public
  Python

  •1•6•0•0•Updated Dec 19, 2023Dec 19, 2023

• OCT-FDFD

  Public
  Simulates OCT images by solving Maxwell's equations through a Finite-Difference Frequency-Domain method

  Python

  •

  MIT License

  •1•0•0•0•Updated Dec 12, 2023Dec 12, 2023