Use jupyter notebook for CT reconstruction

Connect to CG1D-analysis2 cluster using thinlinc client or browser. All the following actions happen inside the connected thinlinc or browser window.

• First start the jupyter notebook if you have not done so
• Then make a copy of the notebook template in the terminal:

$ cp /HFIR/CG1DImaging/shared/notebook-examples/Cu_block.ipynb \
    ~/notebooks/MySample.ipynb

• Open the new notebook by

$ nbopen ~/notebooks/MySample.ipynb

A new browser window should show up.

• In the browser window for your new notebook, click menu "Kernel" -> "Change kernel" -> "imars3d"
• Follow the instructions in the notebook.