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plink2 stuck at generating report #94

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mzhou2012 opened this issue Sep 12, 2022 · 0 comments
Open

plink2 stuck at generating report #94

mzhou2012 opened this issue Sep 12, 2022 · 0 comments

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@mzhou2012
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For some reason the software is stuck at the report generation step. I waited for days and nothing happens. Also the program is not consuming much cpu or memory. I ran plink again as admin and still got the same issue. Could you advise on what else I can try? Thanks!

` *********************************************
/ pParse2.0 (x64) from pFind Studio
/ Email : pfind@ict.ac.cn
\ Website: http://pfind.ict.ac.cn /
*********************************************

[pParse] Calling pXtract to export MS1 and MS2 files...
[pParse] MS1list completes.
[pParse] Processing xxxxxx.MS1
[pParse] CSV file already exists, pParse Complete!
[pParse] == == == Time elapsed: 0 seconds. == == == =
[pLink] Welcome to use pLink v2.3.11, it will be expired on 20250110
[pLink] Search Engine initializing...
[pLink] Generating reverse database...
[pLink] Search identifier: UZXJK
[pLink] Search Engine is ready to search.

[pLink] Start searching xxxxxx_HCDFT.pf2, Labeling None
[pLink] Total spectra: 96326
[pLink] Loaded 5000 spectra, 5000 / 96326
[pLink] Loaded 5000 spectra, 10000 / 96326
[pLink] Loaded 5000 spectra, 15000 / 96326
[pLink] Loaded 5000 spectra, 20000 / 96326
[pLink] Loaded 5000 spectra, 25000 / 96326
[pLink] Loaded 5000 spectra, 30000 / 96326
[pLink] Loaded 5000 spectra, 35000 / 96326
[pLink] Loaded 5000 spectra, 40000 / 96326
[pLink] Loaded 5000 spectra, 45000 / 96326
[pLink] Loaded 5000 spectra, 50000 / 96326
[pLink] Loaded 5000 spectra, 55000 / 96326
[pLink] Loaded 5000 spectra, 60000 / 96326
[pLink] Loaded 5000 spectra, 65000 / 96326
[pLink] Loaded 5000 spectra, 70000 / 96326
[pLink] Loaded 5000 spectra, 75000 / 96326
[pLink] Loaded 5000 spectra, 80000 / 96326
[pLink] Loaded 5000 spectra, 85000 / 96326
[pLink] Loaded 5000 spectra, 90000 / 96326
[pLink] Loaded 5000 spectra, 95000 / 96326
[pLink] Loaded 1326 spectra, 96326 / 96326
[pLink] Complete First search.

[pLink] Load File0.Tmp.All.pfd.
[pLink] there are no enough spaces to infer proteins,
try to allocate new spaces (6.10MB).
[pLink] Start re-ranking using SVM...
[pLink] Iteration: round 1/5
[pLink] Iteration: round 2/5
[pLink] Iteration: round 3/5
[pLink] Iteration: round 4/5
[pLink] Iteration: round 5/5
[pLink] Complete re-rank.

[pLink] Saved Rxxxxxx_2022.09.09.File0.pfd.
[pLink] Complete Searching xxxxxx_HCDFT.pf2.

[pLink] Start to generate reports...
`

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