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Install script updates (#1281)
* Remove custom gphoto2 install * Install from apt, which is at the current version. This should save a lot of time compared to the compiling needed for the custom install. * * Source micromamba properly * * Fixing up more of the conda/mamba init on install. * * Removing install shell function for udev entries, which are handled by `pocs mount setup`. * * Small change to writing of dev entry. * * Remove gphoto2 dev install. * Moving script file location. * Split each install function into a separate file. * Small script fixes. * Passwordless sudo on machine. * Default POCS dir to uppercase. * More consistency with the PANUSER and PANDIR. * Remove from functions so just scripts run. * Setup user and do passwordless, all the good stuff. * Handle pocs clone * Change default shell with sudo * Updating the script install order. * Fix conda install. * Make scripts executable. * Check for zsh dir * Explicit ohmyzsh * Python 3.12 for now. * Add a base script that can be fetched and installed.
1 parent ed60027 commit 8e2c0e3

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‎README.md

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To install POCS via the script, open a terminal and enter (you may be prompted for your `sudo` password):
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```bash
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curl -fsSL https://install.projectpanoptes.org > install-pocs.sh
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bash install-pocs.sh
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curl -fsSL https://install.projectpanoptes.org > install.sh
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bash install.sh
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```
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Or using `wget`:
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```bash
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wget -qO- https://install.projectpanoptes.org > install-pocs.sh
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bash install-pocs.sh
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wget -qO- https://install.projectpanoptes.org > install.sh
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bash install.sh
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```
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The install script will ask a few questions at the beginning of the process. If you are unsure of

‎resources/arduino/install-arduino-cli.sh

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#!/usr/bin/env bash
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# Check for arduino-cli tool first.
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if command -v arduino-cli &> /dev/null; then
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echo "arduino-cli is already installed."
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exit 0
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fi
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# Make sure we are at home.
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cd
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# Get the arduino-cli tool and install.
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curl -fsSL https://raw.githubusercontent.com/arduino/arduino-cli/master/install.sh | sh
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"${HOME}/bin/arduino-cli" config init
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"${HOME}/bin/arduino-cli" core update-index
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"${HOME}/bin/arduino-cli" core install arduino:avr
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"${HOME}/bin/arduino-cli" lib install ArduinoJson
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# Ask if the user wants to install the power board software.
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read -p "Do you want to install the power board software? [y/N] " -n 1 -r
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echo
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if [[ $REPLY =~ ^[Yy]$ ]]; then
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source ./install-power-board.sh
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fi

‎resources/arduino/install-arduino.sh renamed to ‎resources/arduino/install-power-board.sh

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SKETCH_LOCATION="${SKETCH_LOCATION:-PowerBoard}"
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ARDUINO_PORT="${ARDUINO_PORT:-/dev/ttyACM0}"
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arduino-cli config init
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arduino-cli core update-index
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arduino-cli core install arduino:avr
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arduino-cli lib install ArduinoJson
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arduino-cli compile -b "${FQBN}" "${SKETCH_LOCATION}"
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arduino-cli upload -p "${ARDUINO_PORT}" -b "${FQBN}" "${SKETCH_LOCATION}"

‎resources/scripts/fix-time.sh

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#!/usr/bin/env bash
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# We use htpdate below so this just needs to be a public url w/ trusted time.
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TIME_SERVER="${TIME_SERVER:-google.com}"
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function fix_time() {
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echo "Syncing time."
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DEBIAN_FRONTEND=noninteractive sudo apt-get install -y -qq htpdate
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sudo timedatectl set-ntp false
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sudo /usr/sbin/htpdate -as "${TIME_SERVER}"
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sudo timedatectl set-ntp true
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# Add crontab entries for reboot and every hour.
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(
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sudo crontab -l
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echo "@reboot /usr/sbin/htpdate -as ${TIME_SERVER}"
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) | sudo crontab -
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(
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sudo crontab -l
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echo "13 * * * * /usr/sbin/htpdate -s ${TIME_SERVER}"
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) | sudo crontab -
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# Show updated time.
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timedatectl
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}
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fix_time

‎resources/scripts/get-pocs.sh

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#!/usr/bin/env bash
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BRANCH="${BRANCH:-develop}"
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git clone https://github.com/panoptes/POCS
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cd POCS
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git checkout "${BRANCH}"
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cd resources/scripts
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./install.sh
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echo "POCS installed, please reboot."

‎resources/scripts/install-conda.sh

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#!/usr/bin/env bash
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CONDA_URL="https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-$(uname -m).sh"
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PANDIR="${PANDIR:-${HOME}/POCS}"
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CONDA_ENV_NAME=conda-pocs
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echo "Installing miniforge conda"
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wget -q "${CONDA_URL}" -O install-miniforge.sh
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/bin/sh install-miniforge.sh -b -f -p "${HOME}/conda"
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rm install-miniforge.sh
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source "${HOME}/conda/etc/profile.d/conda.sh"
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# Initialize conda for the shells.
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"${HOME}/conda/bin/conda" init bash zsh
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echo "Creating POCS conda environment"
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"${HOME}/conda/bin/conda" create -y -q -n "${CONDA_ENV_NAME}" python=3.12
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# Activate by default
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echo "conda activate ${CONDA_ENV_NAME}" >>"${HOME}/.zshrc"

‎resources/scripts/install-pocs.sh

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#!/usr/bin/env bash
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CODE_BRANCH=${CODE_BRANCH:-"develop"}
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CONDA_ENV_NAME=conda-pocs
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PANDIR="${PANDIR:-${HOME}/POCS}"
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# Check if PANDIR exists and if not, clone.
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if [ -d "${PANDIR}" ]; then
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echo "POCS repo already exists."
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else
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echo "Cloning POCS repo."
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git clone https://github.com/panoptes/POCS "${PANDIR}"
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cd "${PANDIR}"
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git checkout "${CODE_BRANCH}"
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cd
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fi
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echo "Installing POCS into ${CONDA_ENV_NAME} environment."
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"${HOME}/conda/bin/conda" env update -p "${HOME}/conda/envs/${CONDA_ENV_NAME}" -f "${PANDIR}/environment.yaml"
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echo "Creating POCS directories."
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mkdir -p "${HOME}/logs"
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mkdir -p "${HOME}/images"
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mkdir -p "${HOME}/json_store"
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mkdir -p "${HOME}/keys"
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# Link the needed POCS folders.
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ln -s "${PANDIR}/conf_files" "${HOME}"
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ln -s "${PANDIR}/resources" "${HOME}"
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ln -s "${PANDIR}/notebooks" "${HOME}"

‎resources/scripts/install-services.sh

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#!/usr/bin/env bash
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PANUSER="${PANUSER:-panoptes}"
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echo "Installing supervisor services."
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# Make supervisor read our conf file at its current location.
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echo "files = ${HOME}/conf_files/pocs-supervisord.conf" | sudo tee -a /etc/supervisor/supervisord.conf
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# Change the user and home directory.
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sed -i "s/chown=panoptes:panoptes/chown=${PANUSER}:${PANUSER}/g" "${HOME}/conf_files/pocs-supervisord.conf"
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sed -i "s/user=panoptes/user=${PANUSER}/g" "${HOME}/conf_files/pocs-supervisord.conf"
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sed -i "s|/home/panoptes|${HOME}|g" "${HOME}/conf_files/pocs-supervisord.conf"
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# Reread the supervisord conf and restart.
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sudo supervisorctl reread
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sudo supervisorctl update

‎resources/scripts/install-system-deps.sh

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#!/usr/bin/env bash
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echo "Installing system dependencies."
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# Clean up problems.
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sudo apt-get update --fix-missing -y
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# Upgrade.
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sudo apt-get -y full-upgrade
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sudo apt-get -y install \
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ack \
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astrometry.net \
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astrometry-data-tycho2-10-19 \
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byobu \
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curl \
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dcraw \
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exiftool \
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fonts-powerline \
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gcc \
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git \
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gphoto2 \
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htop \
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httpie \
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jo \
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jq \
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libcfitsio-bin \
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make \
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nano \
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supervisor \
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vim-nox \
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wget \
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zsh
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sudo apt-get -y autoremove

‎resources/scripts/install-zsh.sh

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#!/usr/bin/env bash
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PANUSER="${PANUSER:-panoptes}"
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PANDIR="${PANDIR:-${HOME}/POCS}"
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function install_zsh() {
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if [ ! -d "${HOME}/.oh-my-zsh" ]; then
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echo "Using zsh for a better shell experience."
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sudo chsh --shell /usr/bin/zsh "${PANUSER}"
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# Oh my zsh
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wget -q https://raw.githubusercontent.com/ohmyzsh/ohmyzsh/master/tools/install.sh -O /tmp/install-ohmyzsh.sh
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bash /tmp/install-ohmyzsh.sh --unattended
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export ZSH_CUSTOM="$HOME/.oh-my-zsh"
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# Autosuggestions plugin
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git clone https://github.com/zsh-users/zsh-autosuggestions "${ZSH_CUSTOM:-~/.oh-my-zsh/custom}"/plugins/zsh-autosuggestions
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write_zshrc
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fi
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}
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function write_zshrc() {
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cat >"${HOME}/.zshrc" <<EOT
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zstyle ':omz:update' mode disabled
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export PATH="\$HOME/bin:\$HOME/.local/bin:/usr/local/bin:\$PATH"
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export ZSH="/home/${PANUSER}/.oh-my-zsh"
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export PANDIR="${PANDIR}"
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ZSH_THEME="agnoster"
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plugins=(git sudo zsh-autosuggestions docker docker-compose python)
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source \$ZSH/oh-my-zsh.sh
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unsetopt share_history
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EOT
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}
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install_zsh

‎resources/scripts/install.sh

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#!/usr/bin/env bash
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set -e
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echo "Installing POCS"
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echo "Setting up user."
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source ./setup-user.sh > install.log 2>&1
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echo "Fixing system time."
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source ./fix-time.sh >> install.log 2>&1
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echo "Installing system dependencies."
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source ./install-system-deps.sh >> install.log 2>&1
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echo "Installing ZSH for a better shell."
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source ./install-zsh.sh >> install.log 2>&1
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echo "Installing conda python."
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source ./install-conda.sh >> install.log 2>&1
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echo "Installing POCS software."
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source ./install-pocs.sh >> install.log 2>&1
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echo "Installing services so things run at startup."
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source ./install-services.sh >> install.log 2>&1

‎resources/scripts/setup-user.sh

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#!/usr/bin/env bash
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# Set up passwordless sudo for all sudo group.
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echo "%sudo ALL=(ALL) NOPASSWD: ALL" | sudo tee /etc/sudoers.d/panoptes
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# Add an SSH key if one doesn't exist.
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if [[ ! -f "${HOME}/.ssh/id_rsa" ]]; then
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echo "Adding ssh key"
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ssh-keygen -t rsa -N "" -f "${HOME}/.ssh/id_rsa"
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fi

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