Activity
Optimized outputs for PanKB + improvements to locus tag mapping
Optimized outputs for PanKB + improvements to locus tag mapping
Pull request merge
Optimized outputs for PanKB + improvements to locus tag mapping
Optimized outputs for PanKB + improvements to locus tag mapping
Some fixes
Some fixes
Forgot comma
Forgot comma
Updated automlst_wrapper
Updated automlst_wrapper
Fix cd-hit version to mitigate roary error
Fix cd-hit version to mitigate roary error
Small fix
Small fix
Shift make_phylo_tree to merged gtdb+gtdbtk taxonomy
Shift make_phylo_tree to merged gtdb+gtdbtk taxonomy
Removed {stage} from ncbi_datasets
Removed {stage} from ncbi_datasets
Fixed erroneous correction
Fixed erroneous correction
Fix in ncbi_annotation_datasets
Fix in ncbi_annotation_datasets
Improvements
Improvements
Handle missing gff files
Handle missing gff files
Some small fixes and improvements for species with a large amount of …
Some small fixes and improvements for species with a large amount of …
gtdbtk fix
gtdbtk fix
Introduction of original locus tag mapping and iModulonDB interoperab…
Introduction of original locus tag mapping and iModulonDB interoperab…
Small fixes + introduction of pankb_nova genome script
Small fixes + introduction of pankb_nova genome script
Fixed that ln -s expects path relative to output file
Fixed that ln -s expects path relative to output file
Small change for testing
Small change for testing
Improvements
Improvements
Intoduces pankb_nova scripts
Intoduces pankb_nova scripts
New minimal PanKB workflow
New minimal PanKB workflow
Another fix
Another fix
Small fix
Small fix
Enable a simplified variant of hte PanKB_Family workflow
Enable a simplified variant of hte PanKB_Family workflow
Add additional info to species summary
Add additional info to species summary
Updated pankb_data_prep heatmap
Updated pankb_data_prep heatmap
small fix
small fix
Create simple ncbi_meta based on assembly reports
Create simple ncbi_meta based on assembly reports
Added species_info to pankb_data_prep genome_page
Added species_info to pankb_data_prep genome_page