You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Describe the bug
Done in jupyter lab: using import_from_aif from a converted to .aif format (from quantachrome via the online web-aif converter) - fails on import due to string parsing?
To Reproduce
import pygaps.parsing as pgp
isotherm = pgp.isotherm_from_aif('MySample1.aif')
Errors reported:
FutureWarning: errors='ignore' is deprecated and will raise in a future version. Use to_numeric without passing `errors` and catch exceptions explicitly instead
).apply(pandas.to_numeric, errors='ignore')
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
Cell In[4], line 3
1 import pygaps.parsing as pgp
----> 3 isotherm = pgp.isotherm_from_aif('MySample1.aif')
File [~\AppData\Local\anaconda3\Lib\site-packages\pygaps\parsing\aif.py:350](http://localhost:8888/lab/tree/Desktop/~/AppData/Local/anaconda3/Lib/site-packages/pygaps/parsing/aif.py#line=349), in isotherm_from_aif(str_or_path, **isotherm_parameters)
348 # loading/material units
349 loading_material_units = block.find_value('_units_loading').strip("'")
--> 350 loading_material_dict = parse_loading_string(loading_material_units)
351 raw_dict.update(loading_material_dict)
353 # temperature units
File [~\AppData\Local\anaconda3\Lib\site-packages\adsorption_file_parser\utils\unit_parsing.py:199](http://localhost:8888/lab/tree/Desktop/~/AppData/Local/anaconda3/Lib/site-packages/adsorption_file_parser/utils/unit_parsing.py#line=198), in parse_loading_string(loading_string, missing_units)
197 if len(unit_components) != 2:
198 unit_components = loading_string_clean.split(' ')
--> 199 unit_components[1] = unit_components[1].replace('-1', '')
200 if len(unit_components) != 2:
201 raise ParsingError(error_text)
IndexError: list index out of range
Expected behavior
pygaps importer would have imported loading units appropriately... from the .aif the header info is:
System (please complete the following information):
Windows 11, Anaconda
Python 3.11.9 64-bit
Conda 24.7.1
Additional context
Had issues manually creating point-isotherms from data, but further work I think will make it work... coming at this from a few different directions... trying to compare multiple machines (Nova, Quantachrome, Micromeritics)
Where you are from?/How are you using pyGAPS? (optional)
Researcher at Univ. Of IL working on graphene-like carbons
The text was updated successfully, but these errors were encountered:
Describe the bug
Done in jupyter lab: using import_from_aif from a converted to .aif format (from quantachrome via the online web-aif converter) - fails on import due to string parsing?
To Reproduce
Errors reported:
Expected behavior
pygaps importer would have imported loading units appropriately... from the .aif the header info is:
data_raw2aif _exptl_operator 'User1' _exptl_date 2024-08-23T00:00:00 _exptl_instrument 'Autosorb iQ Station 2' _exptl_adsorptive 'Nitrogen' _exptl_temperature 77.35 _adsnt_sample_mass 0.0717 _adsnt_sample_id 'sample1' _adsnt_material_id 'unknown' _units_temperature 'K' _units_pressure 'Torr' _units_mass 'g' _units_loading 'cc' _audit_aif_version d546195
System (please complete the following information):
Additional context
Had issues manually creating point-isotherms from data, but further work I think will make it work... coming at this from a few different directions... trying to compare multiple machines (Nova, Quantachrome, Micromeritics)
Where you are from?/How are you using pyGAPS? (optional)
Researcher at Univ. Of IL working on graphene-like carbons
The text was updated successfully, but these errors were encountered: