diff --git a/vignettes/web_only/basic-intro.Rmd b/vignettes/web_only/basic-intro.Rmd index 840f04c3c..6ffc40a8e 100644 --- a/vignettes/web_only/basic-intro.Rmd +++ b/vignettes/web_only/basic-intro.Rmd @@ -13,9 +13,8 @@ vignette: > ```{r setup, include = FALSE, cache=FALSE} dplyr_installed <- require("dplyr", quietly = TRUE) ggplot_installed <- require("ggplot2", quietly = TRUE) -inla_installed <- require("INLA", quietly = TRUE) sdmTMBextra_installed <- require("sdmTMBextra", quietly = TRUE) -pkgs <- dplyr_installed && ggplot_installed && inla_installed && sdmTMBextra_installed +pkgs <- dplyr_installed && ggplot_installed && sdmTMBextra_installed EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( collapse = TRUE, diff --git a/vignettes/web_only/bayesian.Rmd b/vignettes/web_only/bayesian.Rmd index 88c4403ab..455405291 100644 --- a/vignettes/web_only/bayesian.Rmd +++ b/vignettes/web_only/bayesian.Rmd @@ -15,11 +15,10 @@ vignette: > ```{r setup, include = FALSE, cache=FALSE} dplyr_installed <- require("dplyr", quietly = TRUE) ggplot_installed <- require("ggplot2", quietly = TRUE) -inla_installed <- sdmTMB::inla_installed() tmbstan <- requireNamespace("tmbstan", quietly = TRUE) rstan <- requireNamespace("rstan", quietly = TRUE) bayesplot <- requireNamespace("bayesplot", quietly = TRUE) -pkgs <- dplyr_installed && ggplot_installed && inla_installed && tmbstan && rstan && bayesplot +pkgs <- dplyr_installed && ggplot_installed && tmbstan && rstan && bayesplot EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( collapse = TRUE, diff --git a/vignettes/web_only/cross-validation.Rmd b/vignettes/web_only/cross-validation.Rmd index 392e5bc7b..2eb4669e3 100644 --- a/vignettes/web_only/cross-validation.Rmd +++ b/vignettes/web_only/cross-validation.Rmd @@ -15,8 +15,7 @@ vignette: > ```{r setup, include = FALSE, cache=FALSE} dplyr_installed <- require("dplyr", quietly = TRUE) ggplot_installed <- require("ggplot2", quietly = TRUE) -inla_installed <- sdmTMB::inla_installed() -pkgs <- dplyr_installed && ggplot_installed && inla_installed +pkgs <- dplyr_installed && ggplot_installed EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( collapse = TRUE, diff --git a/vignettes/web_only/delta-models.Rmd b/vignettes/web_only/delta-models.Rmd index 89a12ec05..2c6541642 100644 --- a/vignettes/web_only/delta-models.Rmd +++ b/vignettes/web_only/delta-models.Rmd @@ -14,8 +14,7 @@ vignette: > ```{r setup, include = FALSE, cache=FALSE} dplyr_installed <- require("dplyr", quietly = TRUE) ggplot_installed <- require("ggplot2", quietly = TRUE) -inla_installed <- sdmTMB::inla_installed() -pkgs <- dplyr_installed && ggplot_installed && inla_installed +pkgs <- dplyr_installed && ggplot_installed EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( collapse = TRUE, diff --git a/vignettes/web_only/ggeffects.Rmd b/vignettes/web_only/ggeffects.Rmd index 6082b7473..72ee35eec 100644 --- a/vignettes/web_only/ggeffects.Rmd +++ b/vignettes/web_only/ggeffects.Rmd @@ -16,9 +16,8 @@ dplyr_installed <- require("dplyr", quietly = TRUE) ggplot_installed <- require("ggplot2", quietly = TRUE) ggeffects_installed <- require("ggeffects", quietly = TRUE) effects_installed <- require("effects", quietly = TRUE) -inla_installed <- sdmTMB::inla_installed() pkgs <- dplyr_installed && ggplot_installed && - ggeffects_installed && effects_installed && inla_installed + ggeffects_installed && effects_installed EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( collapse = TRUE, diff --git a/vignettes/web_only/index-standardization.Rmd b/vignettes/web_only/index-standardization.Rmd index 785e23a8d..66b69d58a 100644 --- a/vignettes/web_only/index-standardization.Rmd +++ b/vignettes/web_only/index-standardization.Rmd @@ -13,8 +13,7 @@ vignette: > ```{r setup, include = FALSE, cache=FALSE} dplyr_installed <- require("dplyr", quietly = TRUE) ggplot_installed <- require("ggplot2", quietly = TRUE) -inla_installed <- require("INLA", quietly = TRUE) -pkgs <- dplyr_installed && ggplot_installed && inla_installed +pkgs <- dplyr_installed && ggplot_installed EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( collapse = TRUE, diff --git a/vignettes/web_only/pretty-plots.Rmd b/vignettes/web_only/pretty-plots.Rmd index bbae18423..eef354bd7 100644 --- a/vignettes/web_only/pretty-plots.Rmd +++ b/vignettes/web_only/pretty-plots.Rmd @@ -12,8 +12,7 @@ vignette: > ```{r, include = FALSE} sf_installed <- require("sf", quietly = TRUE) ggplot_installed <- require("ggplot2", quietly = TRUE) -inla_installed <- sdmTMB::inla_installed() -pkgs <- sf_installed && ggplot_installed && inla_installed +pkgs <- sf_installed && ggplot_installed EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( collapse = TRUE, diff --git a/vignettes/web_only/residual-checking.Rmd b/vignettes/web_only/residual-checking.Rmd index cb60157a9..4a150b9f1 100644 --- a/vignettes/web_only/residual-checking.Rmd +++ b/vignettes/web_only/residual-checking.Rmd @@ -12,12 +12,11 @@ vignette: > ```{r setup, include = FALSE, cache=FALSE} dplyr_installed <- require("dplyr", quietly = TRUE) ggplot_installed <- require("ggplot2", quietly = TRUE) -inla_installed <- require("INLA", quietly = TRUE) glmmTMB_installed <- require("glmmTMB", quietly = TRUE) DHARMa_installed <- require("DHARMa", quietly = TRUE) tmbstan_installed <- require("tmbstan", quietly = TRUE) sdmTMBextra_installed <- require("sdmTMBextra", quietly = TRUE) -pkgs <- dplyr_installed && ggplot_installed && inla_installed && glmmTMB_installed && DHARMa_installed && sdmTMBextra_installed +pkgs <- dplyr_installed && ggplot_installed && glmmTMB_installed && DHARMa_installed && sdmTMBextra_installed tmbstan_installed EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( diff --git a/vignettes/web_only/spatial-trend-models.Rmd b/vignettes/web_only/spatial-trend-models.Rmd index d9d90945b..14a96ee6b 100644 --- a/vignettes/web_only/spatial-trend-models.Rmd +++ b/vignettes/web_only/spatial-trend-models.Rmd @@ -13,8 +13,7 @@ vignette: > ```{r setup, include = FALSE, cache=FALSE} dplyr_installed <- require("dplyr", quietly = TRUE) ggplot_installed <- require("ggplot2", quietly = TRUE) -inla_installed <- sdmTMB::inla_installed() -pkgs <- dplyr_installed && ggplot_installed && inla_installed +pkgs <- dplyr_installed && ggplot_installed EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( collapse = TRUE, diff --git a/vignettes/web_only/threshold-models.Rmd b/vignettes/web_only/threshold-models.Rmd index 82f897bb6..51298a38f 100644 --- a/vignettes/web_only/threshold-models.Rmd +++ b/vignettes/web_only/threshold-models.Rmd @@ -13,8 +13,7 @@ vignette: > ```{r setup, include = FALSE, cache=FALSE} dplyr_installed <- require("dplyr", quietly = TRUE) ggplot_installed <- require("ggplot2", quietly = TRUE) -inla_installed <- sdmTMB::inla_installed() -pkgs <- dplyr_installed && ggplot_installed && inla_installed +pkgs <- dplyr_installed && ggplot_installed EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( collapse = TRUE, diff --git a/vignettes/web_only/visreg.Rmd b/vignettes/web_only/visreg.Rmd index 621e0f280..61c36b1ee 100644 --- a/vignettes/web_only/visreg.Rmd +++ b/vignettes/web_only/visreg.Rmd @@ -14,8 +14,7 @@ vignette: > ```{r setup, include = FALSE, cache=FALSE} ggplot_installed <- require("ggplot2", quietly = TRUE) visreg_installed <- require("visreg", quietly = TRUE) -inla_installed <- sdmTMB::inla_installed() -pkgs <- ggplot_installed && visreg_installed && inla_installed +pkgs <- ggplot_installed && visreg_installed EVAL <- identical(Sys.getenv("NOT_CRAN"), "true") && pkgs knitr::opts_chunk$set( collapse = TRUE,