From c944c0e8bc8e23a7869b252886e833a568b42ad4 Mon Sep 17 00:00:00 2001 From: Sean Anderson Date: Fri, 31 May 2024 11:29:47 -0700 Subject: [PATCH] Add OpenBLAS instructions [skip ci] Windows users without admin privileges --- README.Rmd | 3 ++- README.md | 12 +++--------- 2 files changed, 5 insertions(+), 10 deletions(-) diff --git a/README.Rmd b/README.Rmd index 42b6cb70..ca07128c 100644 --- a/README.Rmd +++ b/README.Rmd @@ -38,7 +38,8 @@ pak::pkg_install("pbs-assess/sdmTMB", dependencies = TRUE) There are some extra utilities in the [sdmTMBextra](https://github.com/pbs-assess/sdmTMBextra) package. **Importantly**, it is recommended to use an optimized BLAS library, which will result in major speed improvements for TMB (and other) models in R (e.g., often 8-fold speed increases for sdmTMB models). -Suggested installation instructions for [Mac users](https://www.mail-archive.com/r-sig-mac@r-project.org/msg06199.html), [Linux users](https://prdm0.github.io/ropenblas/), and [Windows users](https://github.com/david-cortes/R-openblas-in-windows). To check that you've successfully linked the optimized BLAS, start a new session and run: +Suggested installation instructions for [Mac users](https://www.mail-archive.com/r-sig-mac@r-project.org/msg06199.html), [Linux users](https://prdm0.github.io/ropenblas/), [Windows users](https://github.com/david-cortes/R-openblas-in-windows), and [Windows users without admin privileges](https://gist.github.com/seananderson/08a51e296a854f227a908ddd365fb9c1). +To check that you've successfully linked the optimized BLAS, start a new session and run: ```r m <- 1e4; n <- 1e3; k <- 3e2 diff --git a/README.md b/README.md index 1ee6dd43..341bcc1d 100644 --- a/README.md +++ b/README.md @@ -65,15 +65,9 @@ pak::pkg_install("pbs-assess/sdmTMB", dependencies = TRUE) There are some extra utilities in the [sdmTMBextra](https://github.com/pbs-assess/sdmTMBextra) package. -**Importantly**, it is recommended to use an optimized BLAS library, -which will result in major speed improvements for TMB (and other) models -in R (e.g., often 8-fold speed increases for sdmTMB models). Suggested -installation instructions for [Mac -users](https://www.mail-archive.com/r-sig-mac@r-project.org/msg06199.html), -[Linux users](https://prdm0.github.io/ropenblas/), and [Windows -users](https://github.com/david-cortes/R-openblas-in-windows). To check -that you’ve successfully linked the optimized BLAS, start a new session -and run: +**Importantly**, it is recommended to use an optimized BLAS library, which will result in major speed improvements for TMB (and other) models in R (e.g., often 8-fold speed increases for sdmTMB models). +Suggested installation instructions for [Mac users](https://www.mail-archive.com/r-sig-mac@r-project.org/msg06199.html), [Linux users](https://prdm0.github.io/ropenblas/), [Windows users](https://github.com/david-cortes/R-openblas-in-windows), and [Windows users without admin privileges](https://gist.github.com/seananderson/08a51e296a854f227a908ddd365fb9c1). +To check that you've successfully linked the optimized BLAS, start a new session and run: ``` r m <- 1e4; n <- 1e3; k <- 3e2