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index.md

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@@ -19,6 +19,7 @@ Most of the settings are pre-configured and the settings you can modify are done
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Harpy is modular, meaning you can use different parts of it independent from each other. Need to only align reads?
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Great! Only want to call variants? Awesome! All modules are called by `harpy <workflow>`. For example, use `harpy align` to align reads.
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{.compact}
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| Workflow | Description |
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| :---------------------------------------------------------------------- | :------------------------------------------------------------------- |
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| [!badge corners="pill" text="align"](Workflows/Align/Align.md) | Align sample sequences to a reference genome |

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