From 9c8a01dc2dea78bd1b4d6beb5e37087791e33162 Mon Sep 17 00:00:00 2001 From: pdimens Date: Mon, 11 Nov 2024 14:36:01 -0500 Subject: [PATCH] wording hotfix --- harpy/simulate.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/harpy/simulate.py b/harpy/simulate.py index 288a2d6f1..f7c36840f 100644 --- a/harpy/simulate.py +++ b/harpy/simulate.py @@ -148,10 +148,10 @@ def linkedreads(genome_hap1, genome_hap2, output_dir, outer_distance, mutation_r Two haplotype genomes (un/compressed fasta) need to be provided as inputs at the end of the command. If you don't have a diploid genome, you can simulate one with `harpy simulate` as described [in the documentation](https://pdimens.github.io/harpy/workflows/simulate/simulate-variants/#simulate-diploid-assembly). - If not providing a text file of `--barcodes`, Harpy will download the `4M-with-alts-february-2016.txt` + If not providing a file for `--barcodes`, Harpy will download the `4M-with-alts-february-2016.txt` file containing the standard 16-basepair 10X barcodes, which is available from 10X genomics and the - LRSIM [GitHub repository](https://github.com/aquaskyline/LRSIM/). Barcodes in the `--barcodes` file - are expected to be one 16-basepar barcode per line. + LRSIM [GitHub repository](https://github.com/aquaskyline/LRSIM/). The `--barcodes` file is + expected to have one 16-basepair barcode per line. """ output_dir = output_dir.rstrip("/") workflowdir = os.path.join(output_dir, 'workflow')