From ba21d37fdff181579291f29ee46b9536e27751e8 Mon Sep 17 00:00:00 2001
From: pdimens <pdimens@live.com>
Date: Thu, 25 Jul 2024 15:10:23 -0400
Subject: [PATCH] fix

---
 src/harpy/snakefiles/snp_mpileup.smk | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/harpy/snakefiles/snp_mpileup.smk b/src/harpy/snakefiles/snp_mpileup.smk
index 0a92383f8..f052e2f39 100644
--- a/src/harpy/snakefiles/snp_mpileup.smk
+++ b/src/harpy/snakefiles/snp_mpileup.smk
@@ -83,7 +83,7 @@ rule genome_setup:
             # is regular gzipped, needs to be BGzipped
             seqtk seq {input} | bgzip -c > {output}
         else
-            cp -f {input} > {output}
+            cp -f {input} {output}
         fi
         """