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CNT git organization user guide

README for penn-cnt members and collaborators

CNT logo

The CNT uses the penn-cnt github organization to share publication-related code as well as internal tools and pipelines.

Teams

We use teams to organize members and repositories by lab. As a team member, you can associate repositories with your team, automatically add all team members as collaborators, and create subteams.

Adding a repository

  1. There are two ways to add a repo:
  • Create a new repository from the home page of the organization
  • Transfer ownership of an existing repository under Settings > Options of the repo that you own. You will still have admin privilages on the repository, but penn-cnt will become the owner (Note: the url for your repository will also change after the transfer).
  1. Associate your repo with your lab team and/or subteam
  2. Add relevant topic keywords (e.g. "publication", "internal tool", "toolbox") to your repository by clicking the gear in the "About" section on the main page of your repo.

Usage Guidelines

  • At the minimum, penn-cnt should be used for publication-related code, but labs/teams can decide their own use cases.
  • Remember that you can use the public/private visibility option for repos that aren't yet ready for primetime
  • External collaborators are welcome! Your repositories will function just as if they were under your ownership, so collaboration settings and privacy settings are still under your jurisdiction