Dev Meetings: Jan - Jun 2024

[aclark02-arcus]

Dev Meetups

• Who? All are welcome! Current developers will be present, but anyone who is interested in contributing OR just wants to listen in may join.
• What? A technical meeting intended to bring together all the {riskassessment} developers who play a role in the project. Developers provide updates to their tasks & recent contributions, discuss various tips to improve the app, and support each other.
• When? Every other Tuesday at 11am EST. How do you know which Tuesday? Add the zoom meeting (below) to your calendar!
• Where? Zoom: https://arcusbio.zoom.us/j/91245862878
• How? Please avoid using this thread for discussion. If you'd like to discuss something in the minutes, open a separate issue and reference this thread. Each meeting will be a new comment in this thread and will be linked at the top of the page. We'll create a new issue every six months so this thread doesn't get too long.

Meetings

Note: Due to a recent change of employers, I only have notes going back to March 2024.

No	Date	Agenda & Notes	No	Date	Agenda & Notes
1	2024-01-02	NA	8	2024-04-09	Link
2	2024-01-16	NA	9	2024-04-23	Link
3	2024-01-30	NA	10	2024-05-07	Link
4	2024-02-13	NA	11	2024-05-21	Link
5	2024-02-27	NA	12	2024-06-04	Link
6	2024-03-12	NA	13	2024-06-18	Link
7	2024-03-26	NA	14	Jul - Dec	Link

Code to produce table

rows <- 13
all <- dplyr::tibble(
  No = 1:rows,
  Date = seq.Date(from = as.Date("2024-01-02"),
                  by = 14,
                  length.out = rows),
  `Agenda & Notes` = "[Link]()"
) 
merge(
  all |> filter(No %in% 1:ceiling(rows/2)),
  all |> filter(!(No %in% 1:ceiling(rows/2))),
  by = 0, all = T, suffixes = c("","")
  ) |>
  knitr::kable()

[aclark02-arcus]

2024-04-09 Dev Meetup

Attendance: @aclark02-arcus, @jthompson-arcus , @narayanan-iyer-pfizer, @BarbMik

Housekeeping items

• Tentatively planning on publishing a new release to master by our next meeting
  • Including About page
  • Will be deployed with ProCogia team & shared with Pharma partners

PRs

• Merged & closed

  • Update deployments article to cite manifest file #758 (@aclark02-arcus)
  • Update report logo to light-theme #759 (@aclark02-arcus)

• Open

  • Need review
    • bm-752 Adds 'About' tab #761 (@BarbMik)
    • Run processes in background #731 (@jthompson-arcus)
  • In-progress drafts
    • Add Package Dependencies to Reports, Part II #750 (@Robert-Krajcik)
      • Ask Robert if we can collaborate to help move this one along
    • Help users understand metric score cards #760 (@aclark02-arcus)

New Issues

• No discussion

[aclark02-arcus]

2024-04-23 Dev Meetup

Attendance: @aclark02-arcus, @jthompson-arcus , @narayanan-iyer-pfizer, @BarbMik

Housekeeping items

• Tentatively planning on publishing a new release to master by our next meeting
  • Including About page
  • Will be deployed with ProCogia team & shared with Pharma partners

PRs

• Merged & closed

  • Failed to track in meeting mins

• Open

  • Need review
    • Failed to track in meeting mins
  • In-progress drafts
    • Failed to track in meeting mins

New Issues / Discussion

• Issue w/ Concurrent Users
  • Need to engineer a way that allows people to download reports in the background while the same person (or other person) is changing data in the database
    • One potential solution: list up the values and shoot them over to the report download renderer

[aclark02-arcus]

2024-05-07 Dev Meetup

Attendance: @aclark02-arcus, @jthompson-arcus , @narayanan-iyer-pfizer, @BarbMik

Housekeeping items

• Tentatively planning on publishing a new release to master
  • timeline: Is it good enough for now?
    • Maybe.
  • Will be deployed with ProCogia team & shared with Pharma partners

PRs

• Merged & closed

  • Update riskmetric #765 (@jthompson-arcus)
  • Update R and package versions #764 (@jthompson-arcus)
  • Help users understand metric score cards #760 (@aclark02-arcus)
  • Add write-manifest.yaml #767 (@jthompson-arcus)
  • Run write-manifest on PRs to dev #773 (@jthompson-arcus)
  • Add Package Dependencies to Reports, Part II #750 (@Robert-Krajcik & @jthompson-arcus)
    • Added Suggests integrations for report downloads
    • Got PDFs working

• Open

  • Need review

    • Clean dependency cards #775 (@aclark02-arcus)
    • Autonavigation #779 (@narayanan-iyer-pfizer)

  • In-progress drafts

    • None discussed

New Issues

• No discussion

[aclark02-arcus]

2024-05-21 Dev Meetup

Attendance: @aclark02-arcus, @jthompson-arcus , @narayanan-iyer-pfizer

Housekeeping items

• There is an R Validation Hub Community Meeting immediately after this meeting - all are encouraged to attend.
• Tentatively planning on publishing a new release to master
  • timeline: as soon as possible
  • Open issues
    • Accommodate user decision upon upload. #663
    • New Package Dependency Card - red flag deps #774
    • Download reports for pkg dependencies into single zip file #722
  • Will be deployed with ProCogia team & shared with Pharma partners

PRs

• Merged & closed

  • None discussed

• Open

  • Need review
    • Clean dependency cards #775 (@aclark02-arcus)
  • In-progress drafts
    • Autonavigation #779 (@narayanan-iyer-pfizer)

New Issues

• No discussion

[aclark02-arcus]

2024-06-04 Dev Meetup

Attendance: @aclark02-arcus, @jthompson-arcus , @narayanan-iyer-pfizer, @BarbMik

Housekeeping items

• Tentatively planning on publishing a new release to master
  • timeline: decided to cut a new release with all the changes we've made so far
  • Last issues:
    • Attached username to batch upload decisions #785 (@jthompson-arcus)
    • Dep Card: Decision Summary #787 (@aclark02-arcus)
  • Will need to:
    • Update Documentation
    • Submit PR for blog post to pharmar.org site
• Next Release for Posit Conf Presentation (Aug 11)
  • Will be deployed with ProCogia team & shared with Pharma partners
  • Need some mechanism to allow for better collaboration within the app before sharing with pharma partners via proCogia deployment. See two issues below as potential solutions.
  • Open issues (due before July 4)
    • Pkg labels/badges into the app to display a custom status #495
    • Allow users to "vote" on a risk decision #662
    • Need to connect with Comms team to communicate with old case study orgs about collaborating on website
      • Need to develop "call for collaboration"

PRs

• Merged & closed

  • Allow assigning decisions from upload file #777 (@jthompson-arcus)
  • Fix delete package bug #782 (@jthompson-arcus)

• Open

  • Need review

    • Add Decision col to Pkg Dependency table #784 (@aclark02-arcus)
    • Adjust custom CSS #786 (@jthompson-arcus)

  • In-progress drafts

    • Dep Card: Decision Summary #787 (@aclark02-arcus)
    • Autonavigation #779 (@narayanan-iyer-pfizer)

New Issues

• See "housekeeping" items above

[aclark02-arcus]

2024-06-18 Dev Meetup

Attendance: @aclark02-arcus, @jthompson-arcus, @narayanan-iyer-pfizer

Housekeeping items

• Planning on publishing a new release to master today
  • timeline: decided to cut a new release with all the changes we've made so far
  • Last issues from 2 weeks ago are wrapped up.
• Next Release for Posit Conf Presentation (Aug 11)
  • Will be deployed with ProCogia team & shared with Pharma partners
  • Need some mechanism to allow for better collaboration within the app before sharing with pharma partners via proCogia deployment. See two issues below as potential solutions.
  • Open issues (due before July 4)
    • Pkg labels/badges into the app to display a custom status #495
    • Allow users to "vote" on a risk decision #662
    • Need to connect with Comms team to communicate with old case study orgs about collaborating on website
      • Need to develop "call for collaboration"

PRs

• Merged & closed

  • Fix get_text_color() #788 (Jeff)
  • Repair interconnectivity of report inclusions #789 (Jeff)
  • Add user name to batch upload #792 (Jeff)
  • Rel v3.1.0 Prep #795 (Aaron)

• Open

  • Need review

    • Autonavigation #779 (@narayanan-iyer-pfizer)

  • In-progress drafts
    *

New Issues

• Issue on dependency tab #791
• Reverse Dep pkgs not subject to "Include Suggests" toggle #783