Skip to content

Problems using multiple ids with aggregate_spectra function #2

@FedeMassetti

Description

@FedeMassetti

I am encountering an error when I try to consider more than one factor in my function while using aggregate_spectra

Using a slightly modified version of the example for aggregate_spectra

# Loading example data
data(australia)
spectra(australia) <- sr_no ~ ... ~ 350:2500

# Generate some kind of factor
australia$fact1 <- rep(paste(letters[1:5]), times=20)
australia$fact2 <- sample(LETTERS[1:3], size=100, , replace = TRUE)

#Mean single
m1 <- aggregate_spectra(australia, fun = mean, id = 'fact1')
plot(m1)

m2 <- aggregate_spectra(australia, fun = mean, id = 'fact2')
plot(m2)

#Median combined
m3 <- aggregate_spectra(australia, fun = mean, id = c('fact1','fact2'))
plot(m3)

m1 and m2 are calculated correctly but when trying to calculate m3 this is the resulted output.

Error in FUN(X[[i]], ...) : object 'fact1' not found In addition: Warning messages: 1: In if (id %in% names(features(obj))) { : the condition has length > 1 and only the first element will be used 2: In names(features(obj)) == id : longer object length is not a multiple of shorter object length

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions