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manual-references.json
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[
{
"id": "url:https://github.com/manubot/rootstock",
"type": "webpage",
"URL": "https://github.com/manubot/rootstock",
"title": "manubot/rootstock GitHub repository",
"container-title": "GitHub",
"issued": {
"date-parts": [
[
2019
]
]
},
"author": [
{
"given": "Daniel",
"family": "Himmelstein"
}
]
},
{
"id": "Okuta2017",
"type": "article-journal",
"title": "CuPy: A NumPy-Compatible Library for NVIDIA GPU Calculations",
"container-title": "Proceedings of Workshop on Machine Learning Systems (LearningSys) in The Thirty-first Annual Conference on Neural Information Processing Systems (NIPS)",
"author": [
{
"given": "Ryosuke",
"family": "Okuta"
},
{
"given": "Yuya",
"family": "Unno"
},
{
"given": "Daisuke",
"family": "Nishino"
},
{
"given": "Shohei",
"family": "Hido"
},
{
"given": "Crissman",
"family": "Loomis"
}
],
"issued": {
"date-parts": [
[
2017
]
]
},
"url": "http://learningsys.org/nips17/assets/papers/paper_16.pdf"
},
{
"id": "Nandi2024",
"type": "paper-conference",
"title": "A Pathway-Level Information Extractor (PLIER) Framework to Gain Mechanistic Insights into Obesity in Down Syndrome",
"container-title": "Proceedings of the Pacific Symposium on Biocomputing 2025 (PSB2025)",
"author": [
{
"given": "Sutanu",
"family": "Nandi"
},
{
"given": "Yuehua",
"family": "Zhu"
},
{
"given": "Lucas A",
"family": "Gillenwater"
},
{
"given": "Marc",
"family": "Subirana Ganes"
},
{
"given": "Haoyu",
"family": "Zhang"
},
{
"given": "Negar",
"family": "Janani"
},
{
"given": "Casey",
"family": "Greene"
},
{
"given": "Milton",
"family": "Pividori"
},
{
"given": "Maria",
"family": "Chikina"
},
{
"given": "James C",
"family": "Costello"
}
],
"issued": {
"date-parts": [
[
2024
]
]
}
}
]