diff --git a/notebooks/load_data.ipynb b/notebooks/load_data.ipynb index 2f9cfb9..08f33c7 100644 --- a/notebooks/load_data.ipynb +++ b/notebooks/load_data.ipynb @@ -24,7 +24,7 @@ } ], "source": [ - "!curl https://rodare.hzdr.de/record/3003/files/VACVPlaque_test.zip -o ../../../../data_backup/VACVPlaque_test.zip \n" + "!curl https://rodare.hzdr.de/record/3003/files/VACVPlaque_test.zip -o ../../../data_backup/VACVPlaque_test.zip \n" ] }, { @@ -132,13 +132,39 @@ "###### We again use the RODARE link to download the high-content 384-well plate fluorescence microscopy data that is used in the `Fluorescence Microscopy Analysis` detailed in the fp_detailed.ipynb, fp_starter.ipynb and example_analysis.ipynb notebooks. Here we have used `curl` which comes preinstalled in MacOS but `wget` for MacOS, Linux and Windows can be equivalently used as well." ] }, + { + "cell_type": "code", + "execution_count": 4, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + " % Total % Received % Xferd Average Speed Time Time Time Current\n", + " Dload Upload Total Spent Left Speed\n", + " 3 9306M 3 340M 0 0 5410k 0 0:29:21 0:01:04 0:28:17 7064k048k 0 0:19:44 0:00:11 0:19:33 7195k 0:27:17 0:00:33 0:26:44 6526k 0 5156k 0 0:30:47 0:00:56 0:29:51 5931k^C\n" + ] + } + ], + "source": [ + "!curl https://rodare.hzdr.de/record/3900/files/cov_raw.zip -o ../../../data_backup/cov_raw.zip" + ] + }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ - "!curl https://rodare.hzdr.de/record/3742/ -o ../../../../data_backup/fluorescence.zip" + "!unzip ../../../data_backup/cov_raw.zip -d ../../../data_backup/cov_raw/" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "###### These now correspond to 384-well fluorescence microscopy images as used in the `fp_detailed`, `fp_starter` and `example_anaalysis` notebooks as mentioned in the the paper. ```cov_raw``` would be the ```base_dir``` used in these notebooks." ] } ], diff --git a/setup.py b/setup.py index 4ea8a6d..5b0b81e 100644 --- a/setup.py +++ b/setup.py @@ -13,7 +13,7 @@ # Get the long description from the README file long_description = (cwd / 'README.md').read_text(encoding='utf-8') -version = 'v0.2.2' +version = 'v0.2.3' setup( name = 'PyPlaque',