From 96b7128b225fc1efd7638cebbfa5a234c3dba046 Mon Sep 17 00:00:00 2001 From: MattWellie Date: Tue, 9 Sep 2025 09:32:27 +1000 Subject: [PATCH] migrate the data version label into the workflow --- images/exomiser/Dockerfile | 11 +---------- 1 file changed, 1 insertion(+), 10 deletions(-) diff --git a/images/exomiser/Dockerfile b/images/exomiser/Dockerfile index 0185c7cb..4cbef5a6 100644 --- a/images/exomiser/Dockerfile +++ b/images/exomiser/Dockerfile @@ -1,7 +1,6 @@ FROM us.gcr.io/broad-gatk/gatk:4.6.2.0 -ARG VERSION=14.1.0 -ARG DATA_VERSION=2502 +ARG VERSION=13.3.0 ENV EXOMISER_STEM="exomiser-cli-${VERSION}" ENV EXOMISER_ARCHIVE="${EXOMISER_STEM}-distribution.zip" @@ -30,11 +29,3 @@ RUN apt-get update && \ pip3 install PyYAML COPY config_shuffle.py template.yaml ./ - -# create the application.properties file, responsive to version ARGs -RUN echo "exomiser.data-directory=/exomiser/${EXOMISER_STEM}/data" > /exomiser/${EXOMISER_STEM}/application.properties && \ - echo "exomiser.hg38.data-version=${DATA_VERSION}" >> /exomiser/${EXOMISER_STEM}/application.properties && \ - echo "exomiser.phenotype.data-version=${DATA_VERSION}" >> /exomiser/${EXOMISER_STEM}/application.properties && \ - echo "exomiser.hg38.clin-var-data-version=${DATA_VERSION}" >> /exomiser/${EXOMISER_STEM}/application.properties && \ - echo "exomiser.hg38.use-clinvar-white-list=true" >> /exomiser/${EXOMISER_STEM}/application.properties && \ - echo "logging.level.com.zaxxer.hikari=ERROR" >> /exomiser/${EXOMISER_STEM}/application.properties