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PIXI BLI Split

This project includes a python library for splitting multi-subject bioluminescent imaging sessions into single subject sessions.

Instructions

The PIXI plugin is required for running this within XNAT.

  1. Build the image: docker build -t xnat/bli-split:1.0 .
  2. Add xnat/command_auto.json to XNAT
  3. Add xnat/command_manual.json to XNAT
  4. Enable the command at the site and project level
  5. Run the container in XNAT from a pixi:bliSessionData instance.