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This is a collection of pipelines to be used for NGS (both DNA and RNA) analyses, from alignment to variant calling.
Start by creating a clone of the repository:
cd /path/to/some/directory
git clone https://github.com/pughlab/pipeline-suite/
Additionally, the report generation portion of this tool requires installation of the BPG plotting package for R: https://CRAN.R-project.org/package=BoutrosLab.plotting.general
