.pre-commit-config.yaml

fail_fast: true
exclude: '.+\.html$'
repos:
-   repo: https://github.com/pre-commit/pre-commit-hooks
    rev: 5df1a4bf6f04a1ed3a643167b38d502575e29aef
    hooks:
    -   id: trailing-whitespace
-   repo: local
    hooks:
    -   id: flake8
        name: Run flake8
        files: ^biopipen/.+$
        pass_filenames: false
        entry: flake8
        args: [biopipen]
        # types: [python]
        # language: system
        # To fix the error in VScode UI: flake8: command not found
        language: python
        additional_dependencies: [flake8]
    -   id: versionchecker
        name: Check version agreement in pyproject and __version__
        entry: bash -c
        language: system
        args:
            - get_ver() { echo $(egrep "^__version|^version " $1 | cut -d= -f2 | sed 's/\"\| //g'); };
              v1=`get_ver pyproject.toml`;
              v2=`get_ver biopipen/__init__.py`;
              if [[ $v1 == $v2 ]]; then exit 0; else exit 1; fi
        pass_filenames: false
        files: ^pyproject\.toml|biopipen/__init__\.py$