From 008036427e86cca929aea98bb0ed8b088adfc46d Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 16:52:47 -0400
Subject: [PATCH 01/23] Update meta.yaml

---
 .conda/meta.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.conda/meta.yaml b/.conda/meta.yaml
index 04248a8886..deb98e8622 100644
--- a/.conda/meta.yaml
+++ b/.conda/meta.yaml
@@ -17,9 +17,9 @@ requirements:
     - setuptools
     - setuptools_scm
   run:
-    - pytorch >=1.13.1
-    - gpytorch ==1.12
-    - linear_operator ==0.5.2
+    - pytorch >=2.0
+    - gpytorch ==1.12.1
+    - linear_operator ==0.5.3
     - scipy
     - multipledispatch
     - pyro-ppl >=1.8.4

From 9cc0b189029e6199e6af80eec4ce1282b97cf7bd Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 16:53:21 -0400
Subject: [PATCH 02/23] Update README.md

---
 README.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index 21ee4aebbd..b47cdd7ebf 100644
--- a/README.md
+++ b/README.md
@@ -56,9 +56,9 @@ Optimization simply use Ax.
 
 **Installation Requirements**
 - Python >= 3.10
-- PyTorch >= 1.13.1
-- gpytorch == 1.12
-- linear_operator == 0.5.2
+- PyTorch >= 2.0
+- gpytorch == 1.12.1
+- linear_operator == 0.5.3
 - pyro-ppl >= 1.8.4
 - scipy
 - multiple-dispatch

From 6b13ccba247fd96da64c52b373775ebaa308b636 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 16:53:58 -0400
Subject: [PATCH 03/23] Update environment.yml

---
 environment.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/environment.yml b/environment.yml
index f659c7b9c3..ed26e0eba6 100644
--- a/environment.yml
+++ b/environment.yml
@@ -4,9 +4,9 @@ channels:
   - gpytorch
   - conda-forge
 dependencies:
-  - pytorch>=1.13.1
-  - gpytorch==1.12
-  - linear_operator==0.5.2
+  - pytorch>=2.0
+  - gpytorch==1.12.1
+  - linear_operator==0.5.3
   - scipy
   - multipledispatch
   - pyro-ppl>=1.8.4

From 3a054e2f185e1f71f6667db8510931d92f3c4d44 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 16:54:31 -0400
Subject: [PATCH 04/23] Update requirements.txt

---
 requirements.txt | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index c094eede8e..a00e5a9a56 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,7 +1,7 @@
 multipledispatch
 scipy
 mpmath>=0.19,<=1.3
-torch>=1.13.1
+torch>=2.0
 pyro-ppl>=1.8.4
-gpytorch==1.12
-linear_operator==0.5.2
+gpytorch==1.12.1
+linear_operator==0.5.3

From 9e001999888dacae05bbcb849725f5f32bbba8e7 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 16:57:43 -0400
Subject: [PATCH 05/23] Update test_stable.yml

---
 .github/workflows/test_stable.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/test_stable.yml b/.github/workflows/test_stable.yml
index 4294e165f1..4b680b45fc 100644
--- a/.github/workflows/test_stable.yml
+++ b/.github/workflows/test_stable.yml
@@ -62,8 +62,6 @@ jobs:
         python setup.py egg_info
         req_txt="botorch.egg-info/requires.txt"
         min_torch_version=$(grep '\btorch[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
-        # HACK around the fact that pytorch does not offer a mac binary for 1.13.1 for py3.11 - TODO: Remove when bumping torch to 2.0.1
-        min_torch_version="$(if ${{ matrix.python-version == '3.11' }} && ${{ matrix.os == 'macos-14' }}; then echo "2.0.1"; else echo "${min_torch_version}"; fi)"
         min_gpytorch_version=$(grep '\bgpytorch[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
         min_linear_operator_version=$(grep '\blinear_operator[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
         pip install "torch==${min_torch_version}" "gpytorch==${min_gpytorch_version}" "linear_operator==${min_linear_operator_version}"

From a2ca6f4e9b4666cac9fd715c4541d8711cf85d9d Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:12:46 -0400
Subject: [PATCH 06/23] Update meta.yaml

---
 .conda/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.conda/meta.yaml b/.conda/meta.yaml
index deb98e8622..a8c0e68baf 100644
--- a/.conda/meta.yaml
+++ b/.conda/meta.yaml
@@ -17,8 +17,8 @@ requirements:
     - setuptools
     - setuptools_scm
   run:
-    - pytorch >=2.0
-    - gpytorch ==1.12.1
+    - pytorch >=2.0.1
+    - gpytorch ==1.13
     - linear_operator ==0.5.3
     - scipy
     - multipledispatch

From 4a3d733888638d9714379afbc1b81361201c7c0e Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:13:15 -0400
Subject: [PATCH 07/23] Update README.md

---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index b47cdd7ebf..d10fa94c66 100644
--- a/README.md
+++ b/README.md
@@ -56,8 +56,8 @@ Optimization simply use Ax.
 
 **Installation Requirements**
 - Python >= 3.10
-- PyTorch >= 2.0
-- gpytorch == 1.12.1
+- PyTorch >= 2.0.1
+- gpytorch == 1.13
 - linear_operator == 0.5.3
 - pyro-ppl >= 1.8.4
 - scipy

From 3f6b1ecb84b033a164c14b0e950e20f8572ad969 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:13:32 -0400
Subject: [PATCH 08/23] Update environment.yml

---
 environment.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/environment.yml b/environment.yml
index ed26e0eba6..9957bcd731 100644
--- a/environment.yml
+++ b/environment.yml
@@ -4,8 +4,8 @@ channels:
   - gpytorch
   - conda-forge
 dependencies:
-  - pytorch>=2.0
-  - gpytorch==1.12.1
+  - pytorch>=2.0.1
+  - gpytorch==1.13
   - linear_operator==0.5.3
   - scipy
   - multipledispatch

From 1760c003f3fbefc2757ecba8ac2fc5e216dffb59 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:14:09 -0400
Subject: [PATCH 09/23] Update requirements.txt

---
 requirements.txt | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index a00e5a9a56..3fbe7d8a05 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,7 +1,7 @@
 multipledispatch
 scipy
 mpmath>=0.19,<=1.3
-torch>=2.0
+torch>=2.0.1
 pyro-ppl>=1.8.4
-gpytorch==1.12.1
+gpytorch==1.13
 linear_operator==0.5.3

From af0a47c75b77974fd7a5ffe1d37c5cf2a083159e Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:47:11 -0400
Subject: [PATCH 10/23] Update test_stable.yml

---
 .github/workflows/test_stable.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/test_stable.yml b/.github/workflows/test_stable.yml
index 4b680b45fc..0093af6eeb 100644
--- a/.github/workflows/test_stable.yml
+++ b/.github/workflows/test_stable.yml
@@ -59,6 +59,7 @@ jobs:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
       run: |
+        pip install setuptools  # Needed for next line on Python 3.12.
         python setup.py egg_info
         req_txt="botorch.egg-info/requires.txt"
         min_torch_version=$(grep '\btorch[>=]=' ${req_txt} | sed 's/[^0-9.]//g')

From f11e8dce6308baf64a360bbcbd1d09a766794ede Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:49:01 -0400
Subject: [PATCH 11/23] Update test_stable.yml

---
 .github/workflows/test_stable.yml | 15 ++++++++++-----
 1 file changed, 10 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/test_stable.yml b/.github/workflows/test_stable.yml
index 0093af6eeb..8a65b1ba1f 100644
--- a/.github/workflows/test_stable.yml
+++ b/.github/workflows/test_stable.yml
@@ -38,10 +38,12 @@ jobs:
         conda install -y -c gpytorch gpytorch
         conda install -y -c conda-forge pyro-ppl>=1.8.4
         pip install .[test]
-    - name: Unit tests
-      shell: bash -l {0}
+    - name: Unit tests and coverage -- BoTorch
+      run: |
+        pytest -ra test/ --cov botorch/ --cov-report term-missing --cov-report xml:botorch_cov.xml
+    - name: Unit tests and coverage -- BoTorch Community
       run: |
-        pytest -ra
+        pytest -ra test_community/ --cov botorch_community/ --cov-report term-missing --cov-report xml:botorch_community_cov.xml
 
   tests-and-coverage-min-req-pip:
     name: Tests and coverage min req. torch, gpytorch & linear_operator versions (pip, Python ${{ matrix.python-version }}, ${{ matrix.os }})
@@ -67,9 +69,12 @@ jobs:
         min_linear_operator_version=$(grep '\blinear_operator[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
         pip install "torch==${min_torch_version}" "gpytorch==${min_gpytorch_version}" "linear_operator==${min_linear_operator_version}"
         pip install .[test]
-    - name: Unit tests and coverage
+    - name: Unit tests and coverage -- BoTorch
+      run: |
+        pytest -ra test/ --cov botorch/ --cov-report term-missing --cov-report xml:botorch_cov.xml
+    - name: Unit tests and coverage -- BoTorch Community
       run: |
-        pytest -ra --cov=. --cov-report term-missing
+        pytest -ra test_community/ --cov botorch_community/ --cov-report term-missing --cov-report xml:botorch_community_cov.xml
 
   run_tutorials_stable_w_latest_ax:
     name: Run tutorials without smoke test on min req. versions of PyTorch & GPyTorch and latest Ax

From c90c64aaf2af031663974fd08fc4580390c1b73b Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:52:29 -0400
Subject: [PATCH 12/23] Update test_stable.yml

---
 .github/workflows/test_stable.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/test_stable.yml b/.github/workflows/test_stable.yml
index 8a65b1ba1f..56b202a0c5 100644
--- a/.github/workflows/test_stable.yml
+++ b/.github/workflows/test_stable.yml
@@ -65,6 +65,8 @@ jobs:
         python setup.py egg_info
         req_txt="botorch.egg-info/requires.txt"
         min_torch_version=$(grep '\btorch[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
+        # The earliest PyTorch version on Python 3.12 is 2.2.0.
+        min_torch_version="$(if ${{ matrix.python-version == '3.12' }}; then echo "2.2.0"; else echo "${min_torch_version}"; fi)"
         min_gpytorch_version=$(grep '\bgpytorch[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
         min_linear_operator_version=$(grep '\blinear_operator[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
         pip install "torch==${min_torch_version}" "gpytorch==${min_gpytorch_version}" "linear_operator==${min_linear_operator_version}"

From 989af9b54834dc4799d9ce10dababa418245f36b Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:56:35 -0400
Subject: [PATCH 13/23] Update meta.yaml

---
 .conda/meta.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.conda/meta.yaml b/.conda/meta.yaml
index a8c0e68baf..458a9f1694 100644
--- a/.conda/meta.yaml
+++ b/.conda/meta.yaml
@@ -19,7 +19,7 @@ requirements:
   run:
     - pytorch >=2.0.1
     - gpytorch ==1.13
-    - linear_operator ==0.5.3
+    - linear_operator ==0.5.4
     - scipy
     - multipledispatch
     - pyro-ppl >=1.8.4

From cbcad3cd8b0d9a52a486886c2ee059045c2e52ad Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:57:00 -0400
Subject: [PATCH 14/23] Update README.md

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index d10fa94c66..8a245bc216 100644
--- a/README.md
+++ b/README.md
@@ -58,7 +58,7 @@ Optimization simply use Ax.
 - Python >= 3.10
 - PyTorch >= 2.0.1
 - gpytorch == 1.13
-- linear_operator == 0.5.3
+- linear_operator == 0.5.4
 - pyro-ppl >= 1.8.4
 - scipy
 - multiple-dispatch

From c372bf367955e4ece0a65d1fde7a6a8d9fedeeb6 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:57:12 -0400
Subject: [PATCH 15/23] Update environment.yml

---
 environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/environment.yml b/environment.yml
index 9957bcd731..33dd6c57d4 100644
--- a/environment.yml
+++ b/environment.yml
@@ -6,7 +6,7 @@ channels:
 dependencies:
   - pytorch>=2.0.1
   - gpytorch==1.13
-  - linear_operator==0.5.3
+  - linear_operator==0.5.4
   - scipy
   - multipledispatch
   - pyro-ppl>=1.8.4

From d6c2622f0ebb6d4f35297e4b38ee0f347e8ed82e Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:57:23 -0400
Subject: [PATCH 16/23] Update requirements.txt

---
 requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements.txt b/requirements.txt
index 3fbe7d8a05..ac58da18c0 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -4,4 +4,4 @@ mpmath>=0.19,<=1.3
 torch>=2.0.1
 pyro-ppl>=1.8.4
 gpytorch==1.13
-linear_operator==0.5.3
+linear_operator==0.5.4

From 74ce0a5ad3bc97d4da8f1eea335fda5779eec96d Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 19:59:42 -0400
Subject: [PATCH 17/23] Update meta.yaml

---
 .conda/meta.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.conda/meta.yaml b/.conda/meta.yaml
index 458a9f1694..a8c0e68baf 100644
--- a/.conda/meta.yaml
+++ b/.conda/meta.yaml
@@ -19,7 +19,7 @@ requirements:
   run:
     - pytorch >=2.0.1
     - gpytorch ==1.13
-    - linear_operator ==0.5.4
+    - linear_operator ==0.5.3
     - scipy
     - multipledispatch
     - pyro-ppl >=1.8.4

From c5c6883295f60911aa2ebe96a670a3ade09f6668 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 20:00:08 -0400
Subject: [PATCH 18/23] Update README.md

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 8a245bc216..d10fa94c66 100644
--- a/README.md
+++ b/README.md
@@ -58,7 +58,7 @@ Optimization simply use Ax.
 - Python >= 3.10
 - PyTorch >= 2.0.1
 - gpytorch == 1.13
-- linear_operator == 0.5.4
+- linear_operator == 0.5.3
 - pyro-ppl >= 1.8.4
 - scipy
 - multiple-dispatch

From 6e0e173ce992ee94491ccb8fd854f43324fd7588 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 20:00:20 -0400
Subject: [PATCH 19/23] Update environment.yml

---
 environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/environment.yml b/environment.yml
index 33dd6c57d4..9957bcd731 100644
--- a/environment.yml
+++ b/environment.yml
@@ -6,7 +6,7 @@ channels:
 dependencies:
   - pytorch>=2.0.1
   - gpytorch==1.13
-  - linear_operator==0.5.4
+  - linear_operator==0.5.3
   - scipy
   - multipledispatch
   - pyro-ppl>=1.8.4

From b2e7b13e8199aef3446a1f8a539292a7a44d0f12 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 20:00:32 -0400
Subject: [PATCH 20/23] Update requirements.txt

---
 requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements.txt b/requirements.txt
index ac58da18c0..3fbe7d8a05 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -4,4 +4,4 @@ mpmath>=0.19,<=1.3
 torch>=2.0.1
 pyro-ppl>=1.8.4
 gpytorch==1.13
-linear_operator==0.5.4
+linear_operator==0.5.3

From d4d697f6a980d9fdef5181fe09260e15cec1bdaa Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Fri, 6 Sep 2024 20:04:22 -0400
Subject: [PATCH 21/23] Update test_stable.yml

---
 .github/workflows/test_stable.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/test_stable.yml b/.github/workflows/test_stable.yml
index 56b202a0c5..baa7a55448 100644
--- a/.github/workflows/test_stable.yml
+++ b/.github/workflows/test_stable.yml
@@ -39,9 +39,11 @@ jobs:
         conda install -y -c conda-forge pyro-ppl>=1.8.4
         pip install .[test]
     - name: Unit tests and coverage -- BoTorch
+      shell: bash -l {0}
       run: |
         pytest -ra test/ --cov botorch/ --cov-report term-missing --cov-report xml:botorch_cov.xml
     - name: Unit tests and coverage -- BoTorch Community
+      shell: bash -l {0}
       run: |
         pytest -ra test_community/ --cov botorch_community/ --cov-report term-missing --cov-report xml:botorch_community_cov.xml
 

From 198d54553ae99f116060a87fbdf7d9b572c093b6 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Sat, 7 Sep 2024 13:55:44 +0200
Subject: [PATCH 22/23] Update reusable_tutorials.yml

---
 .github/workflows/reusable_tutorials.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/reusable_tutorials.yml b/.github/workflows/reusable_tutorials.yml
index 0b9aa1120b..f994f4bce3 100644
--- a/.github/workflows/reusable_tutorials.yml
+++ b/.github/workflows/reusable_tutorials.yml
@@ -54,6 +54,7 @@ jobs:
         min_torch_version=$(grep '\btorch[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
         min_gpytorch_version=$(grep '\bgpytorch[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
         min_linear_operator_version=$(grep '\blinear_operator[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
+        pip install "numpy<2"  # Numpy >2.0 is not compatible with PyTorch <2.2.
         pip install "torch==${min_torch_version}" "gpytorch==${min_gpytorch_version}" "linear_operator==${min_linear_operator_version}" torchvision
     - name: Install BoTorch with tutorials dependencies
       env:

From 2a35bf0774d0608ae53f1d9340e7af841f9e1407 Mon Sep 17 00:00:00 2001
From: Sait Cakmak <saitcakmak@outlook.com>
Date: Sat, 7 Sep 2024 13:56:08 +0200
Subject: [PATCH 23/23] Update test_stable.yml

---
 .github/workflows/test_stable.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/test_stable.yml b/.github/workflows/test_stable.yml
index baa7a55448..1eabadd15b 100644
--- a/.github/workflows/test_stable.yml
+++ b/.github/workflows/test_stable.yml
@@ -71,6 +71,7 @@ jobs:
         min_torch_version="$(if ${{ matrix.python-version == '3.12' }}; then echo "2.2.0"; else echo "${min_torch_version}"; fi)"
         min_gpytorch_version=$(grep '\bgpytorch[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
         min_linear_operator_version=$(grep '\blinear_operator[>=]=' ${req_txt} | sed 's/[^0-9.]//g')
+        pip install "numpy<2"  # Numpy >2.0 is not compatible with PyTorch <2.2.
         pip install "torch==${min_torch_version}" "gpytorch==${min_gpytorch_version}" "linear_operator==${min_linear_operator_version}"
         pip install .[test]
     - name: Unit tests and coverage -- BoTorch