approx_ressearch.h

#pragma once

// Include common types required for searching using SeqAn OSS
#include "types.h"

// Number of allowed errors
#define NB_ERR 1

// Main function for ressearch
void find_kmers(index_t & index, const seqan::DnaString & source_sequence, read2pos_map_t & pos_map, unsigned current_read, uint8_t k,  uint8_t kmer_skip, float lc_threshold, bool reversed );