diff --git a/CHANGELOG.md b/CHANGELOG.md index 24ad9a78a..c21fa43e7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,18 @@ # Qiita changelog +Version 2024.02 +--------------- + +Deployed on February 27th, 2024 + +* Default workflows now accept commands with multiple inputs. +* The loading time of the main study page was improved [#3350](https://github.com/qiita-spots/qiita/pull/3350). +* SPP improvements - mainly @charles-cowart, thank you! Errors are now show to the user in the GUI [#127](hhttps://github.com/biocore/mg-scripts/pull/127), admins can restart jobs [#129](hhttps://github.com/biocore/mg-scripts/pull/129), adapter-trimmer files now are stored and their sequence counts are part of the prep-info [#126](hhttps://github.com/biocore/mg-scripts/pull/126), and support for per instrument/data-type configuration [#123](hhttps://github.com/biocore/mg-scripts/pull/123). +* The internal Sequence Processing Pipeline is now using the https://www.gencodegenes.org human transcripts v44 for Metatranscriptomic data - additional to the human pan-genome reference, with the GRCh38 genome + PhiX and T2T-CHM13v2.0 genome - for human host filtering. +* Added a command to qp-woltka: 'Calculate RNA Copy Counts'. +* Other fixes - mainly by @sjanssen2, thank you!: [#3345](https://github.com/qiita-spots/qiita/pull/3345),[#3224](https://github.com/qiita-spots/qiita/pull/3224), [#3357](https://github.com/qiita-spots/qiita/pull/3357), [#3358](https://github.com/qiita-spots/qiita/pull/3358), [#3359](https://github.com/qiita-spots/qiita/pull/3359), [#3362](https://github.com/qiita-spots/qiita/pull/3362), [#3364](https://github.com/qiita-spots/qiita/pull/3364). + + Version 2023.12 --------------- @@ -14,6 +27,7 @@ Deployed on January 8th, 2024 * Updated the Adapter and host filtering plugin (qp-fastp-minimap2) to v2023.12 addressing a bug in adapter filtering; [more information](https://qiita.ucsd.edu/static/doc/html/processingdata/qp-fastp-minimap2.html). * Other fixes: [3334](https://github.com/qiita-spots/qiita/pull/3334), [3338](https://github.com/qiita-spots/qiita/pull/3338). Thank you @sjanssen2. * The internal Sequence Processing Pipeline is now using the human pan-genome reference, together with the GRCh38 genome + PhiX and T2T-CHM13v2.0 genome for human host filtering. +* Added two new commands to qp-woltka: 'SynDNA Woltka' & 'Calculate Cell Counts'. Version 2023.10 diff --git a/qiita_core/__init__.py b/qiita_core/__init__.py index 349b460d8..7fca55a7c 100644 --- a/qiita_core/__init__.py +++ b/qiita_core/__init__.py @@ -6,4 +6,4 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -__version__ = "2023.12" +__version__ = "2024.02" diff --git a/qiita_db/__init__.py b/qiita_db/__init__.py index c2b6f34a3..63fbc26fc 100644 --- a/qiita_db/__init__.py +++ b/qiita_db/__init__.py @@ -27,7 +27,7 @@ from . import user from . import processing_job -__version__ = "2023.12" +__version__ = "2024.02" __all__ = ["analysis", "artifact", "archive", "base", "commands", "environment_manager", "exceptions", "investigation", "logger", diff --git a/qiita_pet/__init__.py b/qiita_pet/__init__.py index 349b460d8..7fca55a7c 100644 --- a/qiita_pet/__init__.py +++ b/qiita_pet/__init__.py @@ -6,4 +6,4 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -__version__ = "2023.12" +__version__ = "2024.02" diff --git a/qiita_pet/handlers/api_proxy/__init__.py b/qiita_pet/handlers/api_proxy/__init__.py index 85dace443..1f747aba1 100644 --- a/qiita_pet/handlers/api_proxy/__init__.py +++ b/qiita_pet/handlers/api_proxy/__init__.py @@ -38,7 +38,7 @@ from .user import (user_jobs_get_req) from .util import check_access, check_fp -__version__ = "2023.12" +__version__ = "2024.02" __all__ = ['prep_template_summary_get_req', 'data_types_get_req', 'study_get_req', 'sample_template_filepaths_get_req', diff --git a/qiita_ware/__init__.py b/qiita_ware/__init__.py index 349b460d8..7fca55a7c 100644 --- a/qiita_ware/__init__.py +++ b/qiita_ware/__init__.py @@ -6,4 +6,4 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -__version__ = "2023.12" +__version__ = "2024.02" diff --git a/setup.py b/setup.py index 7649c4fc5..caa72a46f 100644 --- a/setup.py +++ b/setup.py @@ -10,7 +10,7 @@ from setuptools import setup from glob import glob -__version__ = "2023.12" +__version__ = "2024.02" classes = """