Merge pull request #29 from quanteda/v0_95

Fix CRAN issues for resubmission

Author: kbenoit

.github/workflows/R-CMD-check.yaml

@@ -6,7 +6,9 @@ on:
   pull_request:
     branches: [main, master]
 
-name: R-CMD-check
+name: R-CMD-check.yaml
+
+permissions: read-all
 
 jobs:
   R-CMD-check:
@@ -29,7 +31,7 @@ jobs:
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -47,3 +49,4 @@ jobs:
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: quanteda.textplots
 Title: Plots for the Quantitative Analysis of Textual Data
-Version: 0.94.4
+Version: 0.95
 Authors@R: 
     c( 
     person("Kenneth", "Benoit", email = "kbenoit@lse.ac.uk", role = c("cre", "aut", "cph"), comment = c(ORCID = "0000-0002-0797-564X")), 
@@ -44,4 +44,4 @@ Encoding: UTF-8
 BugReports: https://github.com/quanteda/quanteda.textplots/issues
 Language: en-GB
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2

R/textplot_network.R

@@ -1,8 +1,8 @@
 #' Plot a network of feature co-occurrences
 #'
-#' Plot an [fcm] object as a network, where edges show co-occurrences of
-#' features.
-#' @param x a [fcm] or [dfm]  object
+#' Plot an [fcm][quanteda::fcm] object as a network, where edges show
+#' co-occurrences of features.
+#' @param x a [fcm][quanteda::fcm] or [dfm][quanteda::dfm]  object
 #' @param min_freq a frequency count threshold or proportion for co-occurrence
 #'   frequencies of features to be included.
 #' @param omit_isolated if `TRUE`, features do not occur more frequent than
@@ -27,9 +27,9 @@
 #'   used for `as.igraph`.
 #' @details Currently the size of the network is limited to 1000, because of the
 #'   computationally intensive nature of network formation for larger matrices.
-#'   When the [fcm] is large, users should select features using
-#'   [fcm_select], set the threshold using `min_freq`, or implement
-#'   own plotting function using [`as.network()`][as.network.fcm].
+#'   When the [fcm][quanteda::fcm] is large, users should select features using
+#'   [fcm_select()][quanteda::fcm_select], set the threshold using `min_freq`,
+#'   or implement own plotting function using [`as.network()`][as.network.fcm].
 #' @author Kohei Watanabe and Stefan Müller
 #' @examples
 #' set.seed(100)
@@ -59,7 +59,7 @@
 #'                  vertex_labelsize = 1.5 * Matrix::rowSums(fcm_30) /
 #'                                     min(Matrix::rowSums(fcm_30)))
 #' @export
-#' @seealso [fcm()]
+#' @seealso [fcm][quanteda::fcm()]
 #' @import ggplot2
 #' @keywords textplot
 textplot_network <- function(x, min_freq = 0.5, omit_isolated = TRUE,
@@ -187,7 +187,7 @@ as.network.fcm <- function(x, min_freq = 0.5, omit_isolated = TRUE, ...) {
 
 #' Convert an fcm to an igraph object
 #'
-#' Convert an [fcm] object to an \pkg{igraph} graph object.
+#' Convert an [fcm][quanteda::fcm] object to an \pkg{igraph} graph object.
 #' @keywords internal
 #' @export
 as.igraph <- function(x, ...) UseMethod("as.igraph")

R/textplot_wordcloud.R

@@ -1,10 +1,10 @@
 #' Plot features as a wordcloud
 #'
-#' Plot a [dfm] or [quanteda.textstats::textstat_keyness] object as a wordcloud,
-#' where the feature labels are plotted with their sizes proportional to their
-#' numerical values in the dfm.  When `comparison = TRUE`, it plots comparison
-#' word clouds by document (or by target and reference categories in the case of
-#' a keyness object).
+#' Plot a [dfm][quanteda::dfm] or [quanteda.textstats::textstat_keyness] object
+#' as a wordcloud, where the feature labels are plotted with their sizes
+#' proportional to their numerical values in the dfm.  When `comparison = TRUE`,
+#' it plots comparison word clouds by document (or by target and reference
+#' categories in the case of a keyness object).
 #' @details
 #'  The default is to plot the word cloud of all features, summed across
 #'  documents.  To produce word cloud plots for specific document or set of
@@ -16,7 +16,8 @@
 #'  create a dfm where the "documents" represent a subset or a grouping of
 #'  documents by some document variable.
 #'
-#' @param x a [dfm] or [quanteda.textstats::textstat_keyness] object
+#' @param x a [dfm][quanteda::dfm] or [quanteda.textstats::textstat_keyness]
+#'   object
 #' @param min_size size of the smallest word
 #' @param max_size size of the largest word
 #' @param min_count words with frequency below min_count will not be plotted

R/textplot_xray.R

@@ -1,13 +1,13 @@
 #' Plot the dispersion of key word(s)
 #'
 #' Plots a dispersion or "x-ray" plot of selected word pattern(s) across one or
-#' more texts. The format of the plot depends on the number of [kwic] class
-#' objects passed: if there is only one document, keywords are plotted one below
-#' the other. If there are multiple documents the documents are plotted one
-#' below the other, with keywords shown side-by-side. Given that this returns a
-#' \pkg{ggplot2} object, you can modify the plot by adding \pkg{ggplot2} layers
-#' (see example).
-#' @param ... any number of [kwic] class objects
+#' more texts. The format of the plot depends on the number of
+#' [kwic][quanteda::kwic] class objects passed: if there is only one document,
+#' keywords are plotted one below the other. If there are multiple documents the
+#' documents are plotted one below the other, with keywords shown side-by-side.
+#' Given that this returns a \pkg{ggplot2} object, you can modify the plot by
+#' adding \pkg{ggplot2} layers (see example).
+#' @param ... any number of [kwic][quanteda::kwic] class objects
 #' @param scale whether to scale the token index axis by absolute position of
 #'   the token in the document or by relative position. Defaults are absolute
 #'   for single document and relative for multiple documents.

cran-comments.md

@@ -1,13 +1,13 @@
 # Submission notes
 
-Fixes NOTEs warned about by CRAN on 22-Jan-2024.
+Fixes problems from 0.94.4 that led to the package being archived, because the authors were either in the process of moving countries and taking on a new job, on summer holidays, or frantically trying to fix UBSAN problems in the main **quanteda** package.
 
 # Checks
 
 ## Test environments
 
-* local macOS 14.2.1, R 4.2.3
-* Ubuntu 22.04 LTS, R 4.2.3
+* local macOS 14.4.1, R 4.4.1, and via devtools::check_mac_release()
+* Ubuntu 22.04 LTS, R 4.4.1
 * Windows release via devtools::check_win_release()
 * Windows devel via devtools::check_win_devel()
 

man/as.igraph.Rd

@@ -10,7 +10,7 @@ using namespace Rcpp;
 bool qatd_cpp_is_overlap(SEXP x1_, SEXP y1_, SEXP w1_, SEXP h1_, SEXP boxe_) {
 
 	double x1 = as<double>(x1_);
-	double y1 =as<double>(y1_);
+	double y1 = as<double>(y1_);
 	double sw1 = as<double>(w1_);
 	double sh1 = as<double>(h1_);
 	Rcpp::List boxes(boxe_);