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Commits on Feb 23, 2024

• Merge pull request #4 from gtsambos/isnone-bugfix

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  tomsasani

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  19e5251

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• Fix for a small typo preventing NoneType arguments being parsed correctly.

  gtsambos

  committed
  7354dae

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Commits on Feb 5, 2024

• Add eLife citation to README

  tomsasani

  committed
  5c3d1b4

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Commits on Jan 19, 2024

• condition scans based on explicit Mb region rather than a single marker

  tomsasani

  committed
  d376670

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Commits on Jan 16, 2024

• minor formatting to remove extra whitespace

  tomsasani

  committed
  345d862

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• remove complicated pip install req's

  tomsasani

  committed
  b4148ee

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Commits on Jan 12, 2024

• bump readme

  tomsasani

  committed
  8f9f3d7

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• unpin test req versions

  tomsasani

  committed
  c2acd36

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• separate req's for testing suite

  tomsasani

  committed
  77db1ba

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• try installing without cache

  tomsasani

  committed
  24be801

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• pin scikit-allel, manually install pulp

  tomsasani

  committed
  a2297a5

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Commits on Jan 11, 2024

• try with explicity cat statement

  tomsasani

  committed
  3c6737e

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• type

  tomsasani

  committed
  47b555a

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• try early install of numpy in workflow

  tomsasani

  committed
  e9221ec

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• try without py3.8

  tomsasani

  committed
  a443e43

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• fix github workflow to install requirements in right order

  tomsasani

  committed
  4d2167f

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• add arg description to docstring

  tomsasani

  committed
  4b07f37

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• update readme to reflect appropriate dependency installation

  tomsasani

  committed
  51d553f

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• remove unneeded imports

  tomsasani

  committed
  d1d9926

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• bump requirements, only generate figures presented in manuscript

  tomsasani

  committed
  3b61baf

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Commits on Jan 4, 2024

• bump readme with new elife link, AMSD instead of IHD

  tomsasani

  committed
  1193aeb

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• smk params for adjusting by marker, lots of yapf formatting

  tomsasani

  committed
  36fffe4

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Commits on Oct 27, 2023

• update major figure generation pipeline

  tomsasani

  committed
  b3b0030

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Commits on Oct 25, 2023

• bump power plots

  tomsasani

  committed
  0049502

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• remove markers in high ld with chr4 allele

  tomsasani

  committed
  49a4fbb

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• formatting in utils

  tomsasani

  committed
  8217e9d

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• remove markers in strong LD with chr4, simplify simulation code

  tomsasani

  committed
  2905a05

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• find ns mutations in bootstrap interval, limit to annotated genes in sv overlap, misc updates

  tomsasani

  committed
  dedf127

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Commits on Jul 28, 2023

• minor formatting in utils, return AF corr of 0 if nan

  tomsasani

  committed
  dead435

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• explicitly include CpG in spectra

  tomsasani

  committed
  110f767

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• use a single thread by default in IHD scan

  tomsasani

  committed
  8e9f657

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• add buffer around transcript start and end when searching for sv overlap

  tomsasani

  committed
  a334e35

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• allow for variable mutation counts in simulations, run QTL scans for every simulated genotype matrix

  tomsasani

  committed
  90e7a3f

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Commits on Jul 12, 2023

• specify mutation type for bxd spectra vs age plot

  tomsasani

  committed
  959553c

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• include unknown genotypes in bxd json file

  tomsasani

  committed
  929acef

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