r-cmd-check.yml

# Build

name: Build

on:
  push:
    branches: [ master ]
    paths-ignore:
      - '/doc'
      - '**/README.md'
  pull_request:
    branches: [ master ]
    paths-ignore:
      - '/doc'
      - '**.md'
  
jobs:
  build:
    name: R ${{ matrix.config.r }} | ${{ matrix.config.os }}
    runs-on: ${{ matrix.config.os }}
    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: ubuntu-latest,  r: 'release'}
    
    env:
      PKG_SYSREQS: false
      INSPIRE_API_ENDPOINT: ${{ secrets.INSPIRE_API_ENDPOINT }}
      INSPIRE_API_KEY: ${{ secrets.INSPIRE_API_KEY }}
      ZENODO_SANDBOX_TOKEN: ${{ secrets.ZENODO_SANDBOX_TOKEN }}
    
    steps:
      - uses: actions/checkout@v3
      
      - uses: r-lib/actions/setup-pandoc@v2
      #SDI integration tests
      #-------------------------
      #Docker Geoserver set-up
      - name: Set up GeoServer (latest)
        run: |
          docker pull kartoza/postgis
          docker run -d --name="postgis" kartoza/postgis
          docker run --name="geoserver" --link postgis:postgis -d -p 8080:8080 oscarfonts/geoserver:latest
      #Docker GeoNetwork set-up
      - name: Set up GeoNetwork (latest)
        run: |
          docker network create elasticnetwork
          docker run -d --name elasticsearch --net elasticnetwork --add-host host.docker.internal:host-gateway -p 9200:9200 -p 9300:9300 -e "discovery.type=single-node" elasticsearch:7.9.2
          docker run --add-host host.docker.internal:host-gateway -e ES_HOST=host.docker.internal --net elasticnetwork --name geonetwork -d -p 8181:8080 geonetwork
      #Docker PyCSW set-up
      - name: Set up PyCSW (latest)
        run: |
          docker pull geopython/pycsw:latest
          docker run --name pycsw -v $GITHUB_WORKSPACE/tests/resources/pycsw/pycsw.cfg:/etc/pycsw/pycsw.cfg -d -p 8000:8000 geopython/pycsw:latest
      #R tests
      #--------------------------
      #- name: dependencies on Linux
      #  if: runner.os == 'Linux'
      #  run: sudo apt-get install -y make libicu-dev libxml2-dev libssl-dev pandoc librdf0-dev libnode-dev libcurl4-gnutls-dev
      #R Set-up
      - name: Set up R ${{ matrix.config.r }}
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true
      #Install dependencies
      #Install dependencies on Linux
      - name: Install dependencies on Linux
        if: runner.os == 'Linux'
        run: sudo apt-get install -y make libsodium-dev libicu-dev libxml2-dev libssl-dev pandoc librdf0-dev libnode-dev libcurl4-gnutls-dev libmysqlclient-dev libpq-dev libcurl4-openssl-dev zlib1g-dev make libjq-dev libsecret-1-dev libnetcdf-dev libpng-dev libgdal-dev gdal-bin libgeos-dev libproj-dev libsqlite3-dev libudunits2-dev
      - name: Install dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::rcmdcheck, any::XML
          needs: check
      #Check R Package
      - name: Check R package
        uses: r-lib/actions/check-r-package@v2
        with:
          upload-snapshots: true
          artifact-name: geoflow_r-${{ matrix.config.r }}_${{ matrix.config.os }}-results