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index.html
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<!DOCTYPE html>
<html lang="en"><head>
<script src="index_files/libs/clipboard/clipboard.min.js"></script>
<script src="index_files/libs/quarto-html/tabby.min.js"></script>
<script src="index_files/libs/quarto-html/popper.min.js"></script>
<script src="index_files/libs/quarto-html/tippy.umd.min.js"></script>
<link href="index_files/libs/quarto-html/tippy.css" rel="stylesheet">
<link href="index_files/libs/quarto-html/light-border.css" rel="stylesheet">
<link href="index_files/libs/quarto-html/quarto-html.min.css" rel="stylesheet" data-mode="light">
<link href="index_files/libs/quarto-html/quarto-syntax-highlighting-dark.css" rel="stylesheet" id="quarto-text-highlighting-styles"><meta charset="utf-8">
<meta name="generator" content="quarto-1.3.450">
<meta name="author" content="François Guilhaumon">
<meta name="dcterms.date" content="2023-11-21">
<title>Quarto</title>
<meta name="apple-mobile-web-app-capable" content="yes">
<meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no, minimal-ui">
<link rel="stylesheet" href="index_files/libs/revealjs/dist/reset.css">
<link rel="stylesheet" href="index_files/libs/revealjs/dist/reveal.css">
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
div.columns{display: flex; gap: min(4vw, 1.5em);}
div.column{flex: auto; overflow-x: auto;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
ul.task-list li input[type="checkbox"] {
width: 0.8em;
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */
vertical-align: middle;
}
/* CSS for syntax highlighting */
pre > code.sourceCode { white-space: pre; position: relative; }
pre > code.sourceCode > span { display: inline-block; line-height: 1.25; }
pre > code.sourceCode > span:empty { height: 1.2em; }
.sourceCode { overflow: visible; }
code.sourceCode > span { color: inherit; text-decoration: inherit; }
div.sourceCode { margin: 1em 0; }
pre.sourceCode { margin: 0; }
@media screen {
div.sourceCode { overflow: auto; }
}
@media print {
pre > code.sourceCode { white-space: pre-wrap; }
pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
}
pre.numberSource code
{ counter-reset: source-line 0; }
pre.numberSource code > span
{ position: relative; left: -4em; counter-increment: source-line; }
pre.numberSource code > span > a:first-child::before
{ content: counter(source-line);
position: relative; left: -1em; text-align: right; vertical-align: baseline;
border: none; display: inline-block;
-webkit-touch-callout: none; -webkit-user-select: none;
-khtml-user-select: none; -moz-user-select: none;
-ms-user-select: none; user-select: none;
padding: 0 4px; width: 4em;
}
pre.numberSource { margin-left: 3em; padding-left: 4px; }
div.sourceCode
{ color: #f8f8f2; }
@media screen {
pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; }
}
code span { color: #f8f8f2; } /* Normal */
code span.al { color: #f07178; background-color: #2a0f15; font-weight: bold; } /* Alert */
code span.an { color: #d4d0ab; } /* Annotation */
code span.at { color: #00e0e0; } /* Attribute */
code span.bn { color: #d4d0ab; } /* BaseN */
code span.bu { color: #abe338; } /* BuiltIn */
code span.cf { color: #ffa07a; font-weight: bold; } /* ControlFlow */
code span.ch { color: #abe338; } /* Char */
code span.cn { color: #ffd700; } /* Constant */
code span.co { color: #f8f8f2; font-style: italic; } /* Comment */
code span.cv { color: #ffd700; } /* CommentVar */
code span.do { color: #f8f8f2; } /* Documentation */
code span.dt { color: #ffa07a; } /* DataType */
code span.dv { color: #d4d0ab; } /* DecVal */
code span.er { color: #f07178; text-decoration: underline; } /* Error */
code span.ex { color: #00e0e0; font-weight: bold; } /* Extension */
code span.fl { color: #d4d0ab; } /* Float */
code span.fu { color: #ffa07a; } /* Function */
code span.im { color: #abe338; } /* Import */
code span.in { color: #d4d0ab; } /* Information */
code span.kw { color: #ffa07a; font-weight: bold; } /* Keyword */
code span.op { color: #ffa07a; } /* Operator */
code span.ot { color: #00e0e0; } /* Other */
code span.pp { color: #dcc6e0; } /* Preprocessor */
code span.re { color: #00e0e0; background-color: #f8f8f2; } /* RegionMarker */
code span.sc { color: #abe338; } /* SpecialChar */
code span.ss { color: #abe338; } /* SpecialString */
code span.st { color: #abe338; } /* String */
code span.va { color: #00e0e0; } /* Variable */
code span.vs { color: #abe338; } /* VerbatimString */
code span.wa { color: #dcc6e0; } /* Warning */
</style>
<link rel="stylesheet" href="index_files/libs/revealjs/dist/theme/quarto.css">
<link rel="stylesheet" href="assets/custom.css">
<link href="index_files/libs/revealjs/plugin/quarto-line-highlight/line-highlight.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/reveal-menu/menu.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/reveal-menu/quarto-menu.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/reveal-chalkboard/font-awesome/css/all.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/reveal-chalkboard/style.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/quarto-support/footer.css" rel="stylesheet">
<style type="text/css">
.callout {
margin-top: 1em;
margin-bottom: 1em;
border-radius: .25rem;
}
.callout.callout-style-simple {
padding: 0em 0.5em;
border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
border-bottom: solid 1px silver;
display: flex;
}
.callout.callout-style-default {
border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
border-bottom: solid 1px silver;
}
.callout .callout-body-container {
flex-grow: 1;
}
.callout.callout-style-simple .callout-body {
font-size: 1rem;
font-weight: 400;
}
.callout.callout-style-default .callout-body {
font-size: 0.9rem;
font-weight: 400;
}
.callout.callout-titled.callout-style-simple .callout-body {
margin-top: 0.2em;
}
.callout:not(.callout-titled) .callout-body {
display: flex;
}
.callout:not(.no-icon).callout-titled.callout-style-simple .callout-content {
padding-left: 1.6em;
}
.callout.callout-titled .callout-header {
padding-top: 0.2em;
margin-bottom: -0.2em;
}
.callout.callout-titled .callout-title p {
margin-top: 0.5em;
margin-bottom: 0.5em;
}
.callout.callout-titled.callout-style-simple .callout-content p {
margin-top: 0;
}
.callout.callout-titled.callout-style-default .callout-content p {
margin-top: 0.7em;
}
.callout.callout-style-simple div.callout-title {
border-bottom: none;
font-size: .9rem;
font-weight: 600;
opacity: 75%;
}
.callout.callout-style-default div.callout-title {
border-bottom: none;
font-weight: 600;
opacity: 85%;
font-size: 0.9rem;
padding-left: 0.5em;
padding-right: 0.5em;
}
.callout.callout-style-default div.callout-content {
padding-left: 0.5em;
padding-right: 0.5em;
}
.callout.callout-style-simple .callout-icon::before {
height: 1rem;
width: 1rem;
display: inline-block;
content: "";
background-repeat: no-repeat;
background-size: 1rem 1rem;
}
.callout.callout-style-default .callout-icon::before {
height: 0.9rem;
width: 0.9rem;
display: inline-block;
content: "";
background-repeat: no-repeat;
background-size: 0.9rem 0.9rem;
}
.callout-title {
display: flex
}
.callout-icon::before {
margin-top: 1rem;
padding-right: .5rem;
}
.callout.no-icon::before {
display: none !important;
}
.callout.callout-titled .callout-body > .callout-content > :last-child {
margin-bottom: 0.5rem;
}
.callout.callout-titled .callout-icon::before {
margin-top: .5rem;
padding-right: .5rem;
}
.callout:not(.callout-titled) .callout-icon::before {
margin-top: 1rem;
padding-right: .5rem;
}
/* Callout Types */
div.callout-note {
border-left-color: #4582ec !important;
}
div.callout-note .callout-icon::before {
background-image: url('data:image/png;base64,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');
}
div.callout-note.callout-style-default .callout-title {
background-color: #dae6fb
}
div.callout-important {
border-left-color: #d9534f !important;
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<div class="slides">
<section id="title-slide" class="quarto-title-block center">
<h1 class="title">Quarto</h1>
<p class="subtitle">Recherche reproductible en écologie numérique</p>
<div class="quarto-title-authors">
<div class="quarto-title-author">
<div class="quarto-title-author-name">
<a href="https://fguilhaumon.github.io/">François Guilhaumon</a> <a href="https://orcid.org/0000-0003-4707-8932" class="quarto-title-author-orcid"> <img src="data:image/png;base64,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"></a>
</div>
<p class="quarto-title-affiliation">
IRD (ENTROPIE)
</p>
</div>
</div>
<p class="date">November 21, 2023</p>
</section>
<section>
<section id="notebooks" class="title-slide slide level1 center">
<h1>Notebooks</h1>
</section>
<section id="section" class="slide level2">
<h2></h2>
<p>RMarkdown & Jupyter Notebook</p>
<div class="columns">
<div class="column" style="width:33%;">
<div class="quarto-figure quarto-figure-center">
<figure>
<p><a href="https://bookdown.org/yihui/rmarkdown/"><img data-src="https://bookdown.org/yihui/rmarkdown/images/cover.png"></a></p>
</figure>
</div>
</div><div class="column" style="width:33%;">
<div class="quarto-figure quarto-figure-center">
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<p><a href="https://bookdown.org/yihui/rmarkdown-cookbook/"><img data-src="https://bookdown.org/yihui/rmarkdown-cookbook/images/cover.png"></a></p>
</figure>
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</div><div class="column" style="width:33%;">
<div class="quarto-figure quarto-figure-center">
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<p><a href="http://ipython-books.github.io/"><img data-src="https://github.com/ipython-books/cookbook-2nd/raw/master/cover-cookbook-2nd.png"></a></p>
</figure>
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</section>
<section id="rmarkdown" class="slide level2">
<h2>RMarkdown</h2>
<p>With time, RMarkdown gathered an entire ecosystem of R packages</p>
<img data-src="https://mine.quarto.pub/hello-quarto/images/1-share/rmd_ecosystem.png" style="width:80.0%" class="r-stretch quarto-figure-center"></section>
<section id="quarto-next-gen-r-markdown" class="slide level2">
<h2>Quarto: Next gen R Markdown</h2>
<img data-src="https://media1.giphy.com/media/v1.Y2lkPTc5MGI3NjExZDY5N2Y5MzY0NGI2ZDNkMWM4ZjU0YzNlNWVmZDg1OTg2ZjIyMmMyMyZjdD1n/XgE4LlECZjw6k/giphy.gif" style="width:20.0%" class="r-stretch quarto-figure-center"><h4 class="centered" id="quarto-unifies-and-extends-the-r-markdown-ecosystem">Quarto <em>unifies</em> and <em>extends</em> the R Markdown ecosystem</h4>
</section>
<section id="section-1" class="slide level2" data-auto-animate="true">
<h2 data-id="quarto-animate-title"></h2>
<p>Quarto is a new, open-source, scientific and technical publishing system</p>
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<section id="section-2" class="slide level2" data-auto-animate="true">
<h2 data-id="quarto-animate-title"></h2>
<p>Quarto is a new, open-source, scientific and technical publishing system</p>
<img data-src="https://cdn.myportfolio.com/45214904-6a61-4e23-98d6-b140f8654a40/c2ef45f1-4a68-4c7a-a43f-bdcf0f90e104.png?h=57404b88e9bf43eea2d2b57c71b13303" class="r-stretch"><p>Quarto is a software (command line interface) that renders plain text formats such as <code>.qmd</code>, <code>.rmd</code>, <code>.md</code> into static PDF/Word/HTML reports, books, websites, presentations and more</p>
</section>
<section id="quarto-cli-orchestrates-each-step-of-rendering" class="slide level2">
<h2>Quarto CLI orchestrates each step of rendering</h2>
<img data-src="https://cdn.myportfolio.com/45214904-6a61-4e23-98d6-b140f8654a40/b5217f2a-f129-4bf9-90dc-c5b9783d0ea8_rw_1920.png?h=0d8c9fc177975359270821bcba83986c" class="r-stretch"></section>
<section id="quarto-basics" class="slide level2">
<h2>Quarto basics</h2>
<p>This is a Quarto file – a plain text file that has the extension <code>.qmd</code>:</p>
<div class="cell">
<div class="cell-output cell-output-stdout">
<pre><code>---
title: "Diamond sizes"
date: 2022-09-12
format: html
---
```{r}
#| label: setup
#| include: false
library(tidyverse)
smaller <- diamonds |>
filter(carat <= 2.5)
```
We have data about `r nrow(diamonds)` diamonds.
Only `r nrow(diamonds) - nrow(smaller)` are larger than 2.5 carats.
The distribution of the remainder is shown below:
```{r}
#| label: plot-smaller-diamonds
#| echo: false
smaller |>
ggplot(aes(x = carat)) +
geom_freqpoly(binwidth = 0.01)
```</code></pre>
</div>
</div>
</section>
<section id="quarto-basics-1" class="slide level2">
<h2>Quarto basics</h2>
<p>It contains three important types of content:</p>
<div>
<ol type="1">
<li class="fragment">An (optional) <strong>YAML header</strong> surrounded by <code>---</code>s.</li>
<li class="fragment"><strong>Chunks</strong> of R code surrounded by <code>```</code>.</li>
<li class="fragment">Text mixed with simple text formatting like <code># heading</code> and <code>_italics_</code>.</li>
</ol>
</div>
</section>
<section id="quarto-basics-2" class="slide level2">
<h2>Quarto basics</h2>
<div class="cell">
<div class="cell-output cell-output-stdout">
<pre><code>---
title: "Diamond sizes"
date: 2022-09-12
format: html
---
```{r}
#| label: setup
#| include: false
library(tidyverse)
smaller <- diamonds |>
filter(carat <= 2.5)
```
We have data about `r nrow(diamonds)` diamonds.
Only `r nrow(diamonds) - nrow(smaller)` are larger than 2.5 carats.
The distribution of the remainder is shown below:
```{r}
#| label: plot-smaller-diamonds
#| echo: false
smaller |>
ggplot(aes(x = carat)) +
geom_freqpoly(binwidth = 0.01)
```</code></pre>
</div>
</div>
</section>
<section id="section-3" class="slide level2">
<h2></h2>
<p>For example, <strong>Quarto</strong> powers <a href="https://computo.sfds.asso.fr/">Computo</a></p>
<p><br></p>
<img data-src="https://computo.sfds.asso.fr/assets/img/logo_text_vertical.svg" style="width:30.0%" class="r-stretch quarto-figure-center"><p class="caption">A journal of the French Statistical Society SFdS - ISSN 2824-7795</p></section></section>
<section>
<section id="quarto-vs-rmarkdown" class="title-slide slide level1 center">
<h1>Quarto VS Rmarkdown</h1>
</section>
<section id="decoupling-from-r" class="slide level2">
<h2>Decoupling from R</h2>
<div>
<ul>
<li class="fragment">Quarto is multi-core and multi-engine</li>
<li class="fragment">Dedicated CLI</li>
<li class="fragment">Unlike Rmd / Jupyter notebooks (Python), Quarto is not tied to a language (<span class="small">You can use Python in Rmd within Rstudio and R in Jupyter notebooks but few people do</span>)</li>
<li class="fragment">Compatible with your editor (Jupyter Lab, Neovim, VS Code, RStudio, etc …), <em>with many visual edition modes available</em></li>
<li class="fragment">Makes collaboration easier</li>
</ul>
</div>
</section></section>
<section>
<section id="quarto-highlights" class="title-slide slide level1 center">
<h1>Quarto highlights</h1>
</section>
<section id="section-4" class="slide level2">
<h2></h2>
<p><br></p>
<div>
<ul>
<li class="fragment">Consistent implementation of features across outputs: (tabsets, code-folding, syntax highlighting)</li>
<li class="fragment">More accessible defaults, better support for accessibility</li>
<li class="fragment">Guardrails, particularly helpful for new learners: (YAML completion, informative syntax errors)</li>
<li class="fragment">Support for other languages like Python, Julia, Observable, …</li>
</ul>
</div>
</section>
<section id="citations-cross-references" class="slide level2">
<h2>Citations / cross-references</h2>
<div>
<ul>
<li class="fragment">citations: bibliography files (bibtex), bibliography style (csl)</li>
</ul>
<div class="fragment">
<div class="sourceCode" id="cb3"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb3-1"><a href="#cb3-1"></a><span class="pp">---</span></span>
<span id="cb3-2"><a href="#cb3-2"></a><span class="fu">title</span><span class="kw">:</span><span class="at"> </span><span class="st">"My Document"</span></span>
<span id="cb3-3"><a href="#cb3-3"></a><span class="fu">bibliography</span><span class="kw">:</span><span class="at"> references.bib</span></span>
<span id="cb3-4"><a href="#cb3-4"></a><span class="fu">csl</span><span class="kw">:</span><span class="at"> nature.csl</span></span>
<span id="cb3-5"><a href="#cb3-5"></a><span class="pp">---</span></span>
<span id="cb3-6"><a href="#cb3-6"></a></span>
<span id="cb3-7"><a href="#cb3-7"></a><span class="at">She said "[...] but you can't stop the future" [@Sp231992].</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<ul>
<li class="fragment">cross-references for figures (<code>fig-</code>), tables (<code>tbl-</code>), sections (<code>sec-</code>), equations (<code>eq-</code>), (<code>thm-</code>), etc</li>
</ul>
<div class="fragment">
<div class="sourceCode" id="cb4"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb4-1"><a href="#cb4-1"></a><span class="co">## Introduction {#sec-introduction}</span></span>
<span id="cb4-2"><a href="#cb4-2"></a></span>
<span id="cb4-3"><a href="#cb4-3"></a><span class="at">See @sec-introduction for additional context.</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
</section>
<section id="extensions" class="slide level2">
<h2>Extensions</h2>
<div>
<ul>
<li class="fragment"><a href="https://github.com/quarto-ext/include-code-files"><code>include-code-files</code></a> : code from source files</li>
<li class="fragment"><a href="https://github.com/quarto-ext/fontawesome"><code>fontawesome</code></a>, <a href="https://github.com/schochastics/academicons"><code>academicons</code></a>, … : Use icons </li>
<li class="fragment"><a href="https://github.com/sellorm/quarto-social-embeds"><code>collapse-social-embeds</code></a> : include social items.</li>
<li class="fragment"><a href="https://quarto.org/docs/extensions/listing-journals.html">Journal Articles Template</a></li>
<li class="fragment"><a href="https://github.com/davidcarayon/quarto-inrae-extension"><code>quarto-inrae-extension</code></a> : INRAE formats for HTML, PDF, Docx, Revealjs, and Beamer, thanks to <a href="https://twitter.com/david_carayon">@david_carayon</a></li>
<li class="fragment">… <a href="https://quarto.org/docs/extensions/">Quarto Extensions</a></li>
</ul>
</div>
</section>
<section id="moving-between-formats-is-straightforward" class="slide level2 centered">
<h2>Moving between formats is straightforward</h2>
<div class="columns">
<div class="column" style="width:33%;">
<div class="fragment">
<p>Document HTML</p>
<div class="code-file sourceCode cell-code">
<p> lesson-1.qmd</p>
</div>
<div class="sourceCode" id="cb5"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb5-1"><a href="#cb5-1"></a><span class="fu">title</span><span class="kw">:</span><span class="at"> </span><span class="st">"Lesson 1"</span></span>
<span id="cb5-2"><a href="#cb5-2"></a><span class="fu">format</span><span class="kw">:</span><span class="at"> html</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="fragment">
<p>Document PDF</p>
<div class="code-file sourceCode cell-code">
<p> lesson-1.qmd</p>
</div>
<div class="sourceCode" id="cb6"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb6-1"><a href="#cb6-1"></a><span class="fu">title</span><span class="kw">:</span><span class="at"> </span><span class="st">"Lesson 1"</span></span>
<span id="cb6-2"><a href="#cb6-2"></a><span class="fu">format</span><span class="kw">:</span><span class="at"> pdf</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div><div class="column" style="width:33%;">
<div class="fragment">
<p>Presentation</p>
<div class="code-file sourceCode cell-code">
<p> lesson-1.qmd</p>
</div>
<div class="sourceCode" id="cb7"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb7-1"><a href="#cb7-1"></a><span class="fu">title</span><span class="kw">:</span><span class="at"> </span><span class="st">"Lesson 1"</span></span>
<span id="cb7-2"><a href="#cb7-2"></a><span class="fu">format</span><span class="kw">:</span><span class="at"> revealjs</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="fragment">
<p>Book</p>
<div class="code-file sourceCode cell-code">
<p> _quarto.yml</p>
</div>
<div class="sourceCode" id="cb8"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb8-1"><a href="#cb8-1"></a><span class="fu">project</span><span class="kw">:</span></span>
<span id="cb8-2"><a href="#cb8-2"></a><span class="at"> </span><span class="fu">type</span><span class="kw">:</span><span class="at"> book</span></span>
<span id="cb8-3"><a href="#cb8-3"></a><span class="at"> </span><span class="fu">output-dir</span><span class="kw">:</span><span class="at"> _book</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div><div class="column" style="width:33%;">
<div class="fragment">
<p>Website</p>
<div class="code-file sourceCode cell-code">
<p> _quarto.yml</p>
</div>
<div class="sourceCode" id="cb9"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb9-1"><a href="#cb9-1"></a><span class="fu">project</span><span class="kw">:</span></span>
<span id="cb9-2"><a href="#cb9-2"></a><span class="at"> </span><span class="fu">type</span><span class="kw">:</span><span class="at"> website</span></span>
<span id="cb9-3"><a href="#cb9-3"></a><span class="fu">website</span><span class="kw">:</span><span class="at"> </span></span>
<span id="cb9-4"><a href="#cb9-4"></a><span class="at"> </span><span class="fu">navbar</span><span class="kw">:</span><span class="at"> </span></span>
<span id="cb9-5"><a href="#cb9-5"></a><span class="at"> </span><span class="fu">left</span><span class="kw">:</span></span>
<span id="cb9-6"><a href="#cb9-6"></a><span class="at"> </span><span class="kw">-</span><span class="at"> lesson-1.qmd</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
</div>
<aside><div>
<p>And more in the <a href="https://quarto.org/docs/gallery/">Gallery</a> …</p>
</div></aside></section>
<section id="rstudio-integration" class="slide level2">
<h2>RStudio integration</h2>
<img data-src="https://quarto.org/docs/get-started/hello/images/rstudio-hello.png" class="r-stretch"></section></section>
<section>
<section id="presentations" class="title-slide slide level1 center">
<h1>Presentations</h1>
</section>
<section id="easy-presentations" class="slide level2">
<h2>Easy presentations</h2>
<div class="quarto-layout-panel">
<div class="quarto-layout-row quarto-layout-valign-top">
<div class="quarto-layout-cell" style="flex-basis: 4.8%;justify-content: center;">
<p><img data-src="https://quarto.org/docs/presentations/revealjs/demo/images/presentation-menu.png" width="41"></p>
</div>
<div class="quarto-layout-cell" style="flex-basis: 95.2%;justify-content: center;">
<p>Toggle the slide menu with the menu button to go to other slides and access presentation tools. Some other tools like <strong>PDF Export</strong> in this settings.</p>
</div>
</div>
</div>
<div class="fragment">
<div class="quarto-layout-panel">
<div class="quarto-layout-row quarto-layout-valign-top">
<div class="quarto-layout-cell" style="flex-basis: 4.8%;justify-content: center;">
<p><img data-src="https://quarto.org/docs/presentations/revealjs/demo/images/presentation-chalkboard.png" width="41"></p>
</div>
<div class="quarto-layout-cell" style="flex-basis: 95.2%;justify-content: center;">
<p>Use the chalkboard button to toggle the chalkboard.</p>
</div>
</div>
</div>
</div>
<div class="fragment">
<div class="quarto-layout-panel">
<div class="quarto-layout-row quarto-layout-valign-top">
<div class="quarto-layout-cell" style="flex-basis: 4.8%;justify-content: center;">
<p><img data-src="https://quarto.org/docs/presentations/revealjs/demo/images/presentation-notes-canvas.png" width="41"></p>
</div>
<div class="quarto-layout-cell" style="flex-basis: 95.2%;justify-content: center;">
<p>Use the notes canvas button to toggle drawing on top of the current slide.</p>
</div>
</div>
</div>
</div>
</section>
<section id="callout-blocks" class="slide level2">
<h2>Callout-blocks</h2>
<div class="sourceCode" id="cb10"><pre class="sourceCode numberSource yaml number-lines code-with-copy"><code class="sourceCode yaml"><span id="cb10-1"><a href="#cb10-1"></a><span class="at">:</span><span class="fu">:</span><span class="kw">:</span><span class="at"> </span><span class="kw">{</span><span class="at">.callout-note</span><span class="kw">}</span></span>
<span id="cb10-2"><a href="#cb10-2"></a><span class="fu">Five types of callouts</span><span class="kw">:</span><span class="at"> `note`, `warning`, </span></span>
<span id="cb10-3"><a href="#cb10-3"></a><span class="at">`important`, `tip`, and `caution`.</span></span>
<span id="cb10-4"><a href="#cb10-4"></a><span class="at">:</span><span class="fu">:</span><span class="kw">:</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<p><br><br></p>
<div class="callout callout-note callout-titled callout-style-default">
<div class="callout-body">
<div class="callout-title">
<div class="callout-icon-container">
<i class="callout-icon"></i>
</div>
<p><strong>Note</strong></p>
</div>
<div class="callout-content">
<p>Five types of callouts: <strong><code>note</code></strong>, <code>warning</code>, <code>important</code>, <code>tip</code> and <code>caution</code>.</p>
</div>
</div>
</div>
<div class="callout callout-tip callout-titled callout-style-default">
<div class="callout-body">
<div class="callout-title">
<div class="callout-icon-container">
<i class="callout-icon"></i>
</div>
<p><strong>Tip</strong></p>
</div>
<div class="callout-content">
<p>Five types of callouts: <code>note</code>, <code>warning</code>, <code>important</code>, <strong><code>tip</code></strong> and <code>caution</code>.</p>
</div>
</div>
</div>
</section>
<section id="diagrams" class="slide level2">
<h2>Diagrams</h2>
<div class="sourceCode" id="cb11"><pre class="sourceCode markdown code-with-copy"><code class="sourceCode markdown"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a><span class="in">```{mermaid}</span></span>
<span id="cb11-2"><a href="#cb11-2" aria-hidden="true" tabindex="-1"></a>flowchart LR</span>
<span id="cb11-3"><a href="#cb11-3" aria-hidden="true" tabindex="-1"></a> A[Hard edge] --> B(Round edge)</span>
<span id="cb11-4"><a href="#cb11-4" aria-hidden="true" tabindex="-1"></a> B --> C{Decision}</span>
<span id="cb11-5"><a href="#cb11-5" aria-hidden="true" tabindex="-1"></a> C --> D[Result one]</span>
<span id="cb11-6"><a href="#cb11-6" aria-hidden="true" tabindex="-1"></a> C --> E[Result two]</span>
<span id="cb11-7"><a href="#cb11-7" aria-hidden="true" tabindex="-1"></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<p><br><br></p>
<div class="cell" data-reveal="true">
<div class="cell-output-display">
<div>
<div>
<pre class="mermaid mermaid-js">flowchart LR
A[Hard edge] --> B(Round edge)
B --> C{Decision}
C --> D[Result one]
C --> E[Result two]
</pre>
</div>
</div>
</div>
</div>
</section>
<section id="videos" class="slide level2">
<h2>Videos</h2>
<div class="sourceCode" id="cb12" data-shortcodes="false"><pre class="sourceCode numberSource default number-lines code-with-copy"><code class="sourceCode default"><span id="cb12-1"><a href="#cb12-1"></a>{{< video https://www.youtube.com/watch?v=KPXFs2YU3F4>}}</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<p><span class="center"><iframe data-external="1" src="https://www.youtube.com/embed/KPXFs2YU3F4?start=423" width="700" height="500" title="Future Maore Reefs" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen=""></iframe></span></p>
</section>
<section id="widgets" class="slide level2">
<h2>Widgets</h2>
<p>Native support for <a href="https://quarto.org/docs/interactive/widgets/jupyter.html">JupyterWidgets</a> (Jupyter) and <a href="https://quarto.org/docs/interactive/widgets/htmlwidgets.html">htmlwidgets</a> (R/knitr)</p>
<div style="font-size: 0.9em">
<div class="cell columns column-output-location">
<div class="column">
<div class="sourceCode cell-code" id="cb13"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb13-1"><a href="#cb13-1"></a><span class="in">```{r}</span></span>
<span id="cb13-2"><a href="#cb13-2"></a><span class="co">#| output-location: column-fragment</span></span>
<span id="cb13-3"><a href="#cb13-3"></a><span class="fu">library</span>(leaflet)</span>
<span id="cb13-4"><a href="#cb13-4"></a><span class="fu">leaflet</span>(<span class="at">width =</span> <span class="st">"480px"</span>) <span class="sc">%>%</span></span>
<span id="cb13-5"><a href="#cb13-5"></a> <span class="fu">addTiles</span>() <span class="sc">%>%</span></span>
<span id="cb13-6"><a href="#cb13-6"></a> <span class="fu">addMarkers</span>(</span>
<span id="cb13-7"><a href="#cb13-7"></a> <span class="at">lat=</span><span class="fl">43.61270525357229</span>, </span>
<span id="cb13-8"><a href="#cb13-8"></a> <span class="at">lng=</span><span class="fl">3.8733237524215443</span>, </span>
<span id="cb13-9"><a href="#cb13-9"></a> <span class="at">popup=</span><span class="st">"We are here!"</span></span>
<span id="cb13-10"><a href="#cb13-10"></a> )</span>
<span id="cb13-11"><a href="#cb13-11"></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div><div class="column fragment">
<div class="cell-output-display">
<div id="htmlwidget-e4b61d152be35aac188a" style="width:480px;height:480px;" class="leaflet html-widget "></div>
<script type="application/json" data-for="htmlwidget-e4b61d152be35aac188a">{"x":{"options":{"crs":{"crsClass":"L.CRS.EPSG3857","code":null,"proj4def":null,"projectedBounds":null,"options":{}}},"calls":[{"method":"addTiles","args":["https://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png",null,null,{"minZoom":0,"maxZoom":18,"tileSize":256,"subdomains":"abc","errorTileUrl":"","tms":false,"noWrap":false,"zoomOffset":0,"zoomReverse":false,"opacity":1,"zIndex":1,"detectRetina":false,"attribution":"© <a href=\"https://openstreetmap.org\">OpenStreetMap<\/a> contributors, <a href=\"https://creativecommons.org/licenses/by-sa/2.0/\">CC-BY-SA<\/a>"}]},{"method":"addMarkers","args":[43.61270525357229,3.873323752421544,null,null,null,{"interactive":true,"draggable":false,"keyboard":true,"title":"","alt":"","zIndexOffset":0,"opacity":1,"riseOnHover":false,"riseOffset":250},"We are here!",null,null,null,null,{"interactive":false,"permanent":false,"direction":"auto","opacity":1,"offset":[0,0],"textsize":"10px","textOnly":false,"className":"","sticky":true},null]}],"limits":{"lat":[43.61270525357229,43.61270525357229],"lng":[3.873323752421544,3.873323752421544]}},"evals":[],"jsHooks":[]}</script>
</div>
</div>
</div>
</div>
</section>
<section id="transitions" class="slide level2 smaller">
<h2>Transitions</h2>
<p>Use <code>. . .</code> to indicate a break at an arbitrary location</p>
<div class="fragment">
<div style="font-size: 0.9em">
<div class="sourceCode" id="cb14"><pre class="sourceCode markdown code-with-copy"><code class="sourceCode markdown"><span id="cb14-1"><a href="#cb14-1" aria-hidden="true" tabindex="-1"></a>Let's have a look at <span class="in">`iris`</span></span>
<span id="cb14-2"><a href="#cb14-2" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb14-3"><a href="#cb14-3" aria-hidden="true" tabindex="-1"></a>. . . </span>
<span id="cb14-4"><a href="#cb14-4" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb14-5"><a href="#cb14-5" aria-hidden="true" tabindex="-1"></a><span class="in">```{r}</span></span>
<span id="cb14-6"><a href="#cb14-6" aria-hidden="true" tabindex="-1"></a><span class="fu">head</span>(iris) <span class="sc">|></span> knitr<span class="sc">::</span><span class="fu">kable</span>()</span>
<span id="cb14-7"><a href="#cb14-7" aria-hidden="true" tabindex="-1"></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</div>
<div class="fragment">
<p>Let’s have a look at <code>iris</code></p>
</div>
<div class="fragment">
<div class="cell">
<div class="cell-output-display">
<table>
<thead>
<tr class="header">
<th style="text-align: right;">Sepal.Length</th>
<th style="text-align: right;">Sepal.Width</th>
<th style="text-align: right;">Petal.Length</th>
<th style="text-align: right;">Petal.Width</th>
<th style="text-align: left;">Species</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td style="text-align: right;">5.1</td>
<td style="text-align: right;">3.5</td>
<td style="text-align: right;">1.4</td>
<td style="text-align: right;">0.2</td>
<td style="text-align: left;">setosa</td>
</tr>
<tr class="even">
<td style="text-align: right;">4.9</td>
<td style="text-align: right;">3.0</td>
<td style="text-align: right;">1.4</td>
<td style="text-align: right;">0.2</td>
<td style="text-align: left;">setosa</td>
</tr>
<tr class="odd">
<td style="text-align: right;">4.7</td>
<td style="text-align: right;">3.2</td>
<td style="text-align: right;">1.3</td>
<td style="text-align: right;">0.2</td>
<td style="text-align: left;">setosa</td>
</tr>
<tr class="even">
<td style="text-align: right;">4.6</td>
<td style="text-align: right;">3.1</td>
<td style="text-align: right;">1.5</td>
<td style="text-align: right;">0.2</td>
<td style="text-align: left;">setosa</td>
</tr>
<tr class="odd">
<td style="text-align: right;">5.0</td>
<td style="text-align: right;">3.6</td>
<td style="text-align: right;">1.4</td>
<td style="text-align: right;">0.2</td>
<td style="text-align: left;">setosa</td>
</tr>
<tr class="even">
<td style="text-align: right;">5.4</td>
<td style="text-align: right;">3.9</td>
<td style="text-align: right;">1.7</td>
<td style="text-align: right;">0.4</td>
<td style="text-align: left;">setosa</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</section>
<section id="fragments" class="slide level2">
<h2>Fragments</h2>
<div class="columns">
<div class="column" style="width:60%;">
<div style="font-size: 0.75em">
<pre><code>
::: {.fragment}
Fade in
:::
::: {.fragment .fade-out}
Fade out
:::
::: {.fragment .strike}
Strike text
:::
::: {.fragment .fade-in-then-out}
Fade in, then out
:::
::: {.fragment .fade-up}
Slide up while fading in
:::</code></pre>
</div>
</div><div class="column" style="width:40%;">
<div class="fragment">
<p>Fade in</p>
</div>
<div class="fragment fade-out">
<p>Fade out</p>
</div>
<div class="fragment strike">
<p>Strike text</p>
</div>
<div class="fragment fade-in-then-out">
<p>Fade in, then out</p>
</div>
<div class="fragment fade-up">
<p>Slide up while fading in</p>
</div>
</div>
</div>
</section>
<section id="column-output" class="slide level2">
<h2>Column output</h2>
<div style="font-size: 0.8em">
<div class="cell columns column-output-location">
<div class="column">
<div class="sourceCode cell-code" id="cb16" data-code-line-numbers="|3"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb16-1"><a href="#cb16-1"></a><span class="in">```{r}</span></span>
<span id="cb16-2"><a href="#cb16-2"></a><span class="co">#| code-line-numbers: "|3"</span></span>
<span id="cb16-3"><a href="#cb16-3"></a><span class="co">#| output-location: column</span></span>
<span id="cb16-4"><a href="#cb16-4"></a></span>
<span id="cb16-5"><a href="#cb16-5"></a><span class="fu">library</span>(ggplot2)</span>
<span id="cb16-6"><a href="#cb16-6"></a></span>
<span id="cb16-7"><a href="#cb16-7"></a><span class="fu">ggplot</span>(mtcars, <span class="fu">aes</span>(hp, mpg)) <span class="sc">+</span></span>
<span id="cb16-8"><a href="#cb16-8"></a> <span class="fu">geom_point</span>() <span class="sc">+</span></span>
<span id="cb16-9"><a href="#cb16-9"></a> <span class="fu">geom_smooth</span>(<span class="at">formula =</span> y <span class="sc">~</span> x, <span class="at">method =</span> <span class="st">"loess"</span>)</span>
<span id="cb16-10"><a href="#cb16-10"></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div><div class="column">
<div class="cell-output-display">
<p><img data-src="index_files/figure-revealjs/unnamed-chunk-6-1.png" width="960"></p>
</div>
</div>
</div>
</div>
<div class="fragment">
<div style="font-size: 0.8em">
<div class="cell columns column-output-location">
<div class="column">
<div class="sourceCode cell-code" id="cb17" data-code-line-numbers="|3"><pre class="sourceCode numberSource markdown number-lines code-with-copy"><code class="sourceCode markdown"><span id="cb17-1"><a href="#cb17-1"></a><span class="in">```{r}</span></span>
<span id="cb17-2"><a href="#cb17-2"></a><span class="co">#| code-line-numbers: "|3"</span></span>
<span id="cb17-3"><a href="#cb17-3"></a><span class="co">#| output-location: column-fragment</span></span>
<span id="cb17-4"><a href="#cb17-4"></a><span class="fu">ggplot</span>(mtcars, <span class="fu">aes</span>(hp, mpg)) <span class="sc">+</span></span>
<span id="cb17-5"><a href="#cb17-5"></a> <span class="fu">geom_point</span>() <span class="sc">+</span></span>
<span id="cb17-6"><a href="#cb17-6"></a> <span class="fu">geom_smooth</span>(<span class="at">formula =</span> y <span class="sc">~</span> x, <span class="at">method =</span> <span class="st">"loess"</span>)</span>
<span id="cb17-7"><a href="#cb17-7"></a><span class="in">```</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div><div class="column fragment">
<div class="cell-output-display">
<p><img data-src="index_files/figure-revealjs/unnamed-chunk-7-1.png" width="960"></p>
</div>
</div>
</div>
</div>
</div>
</section>
<section id="tabset-output" class="slide level2 smaller">